Re: [galaxy-dev] [galaxy-bugs] Galaxy tool error report from etiennewa...@yahoo.fr (megablast_wrapper)

2016-04-01 Thread Jennifer Hillman-Jackson
Hi Etienne, Sorry, I didn't notice that the job was run on the test server. The root of the problem could be that the job output exceeds quota. Running the job there will not get around quota, even if the tool has other issues on test that are triggering the failure (is possible - we do test on t

Re: [galaxy-dev] Sandbox repository item says "This revision can be installed: False

2016-04-01 Thread Nicola Soranzo
Hi Bob, it seems that you uploaded a zip file, but only tar.gz and tar.bz2 archives are supported. Try to create one archive of these types and upload it to the existing repository with the default options. Cheers, Nicola On 01/04/16 18:04, rbrown1...@comcast.net wrote: Good afternoon, I loa

[galaxy-dev] Sandbox repository item says "This revision can be installed: False

2016-04-01 Thread rbrown1422
Good afternoon, I loaded a tool into the Galaxy https://testtoolshed.g2.bx.psu.edu/ toolshed. It is an xml and python module. It accepted the file fine but with the following output Sharable link to this repository:https://testtoolshed.g2.bx.psu.edu/view/insilico-bob/mean_center_matrix/ac

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-01 Thread Björn Grüning
Hi Keith, with this PR merged https://github.com/bgruening/docker-galaxy-stable/pull/164 You can use the Galaxy Docker Image and pass in the -e BARE=True option. This will give you an production ready Galaxy Instance without tools, but with FTP Server, scheduler and activated TS. You could even

[galaxy-dev] Problem on postgress database

2016-04-01 Thread jarod...@libero.it
Hi! I have centos 6.7 and I have install galaxy. I setup galaxy.ini with: database_connection = postgresql://user:password@localhost/galaxydb # TYPE DATABASEUSERCIDR-ADDRESS METHOD # "local" is for Unix domain socket connections only local all all