Re: [galaxy-dev] Send repeat parameter to code file for multiple select list

On Fri, Sep 2, 2016 at 9:07 PM, Katherine Beaulieu < katherine.beaulieu...@gmail.com> wrote: > Hi Bjorn, > Thank you for taking the time to reply to my question. I don't think this > quite fits what I am trying to accomplish. I am trying to pass a set of > metadata key value pairs, where the user

Re: [galaxy-dev] Development/production instances updates management

We do exactly this. We have a staging instance, and a production instance. Both exist in a single git repo as separate branches. The main different for this is that the staging and production config file point to different port and database instances. We also maintain a staging and production

Re: [galaxy-dev] how to create users through Galaxy API?

Hi, and here a script used by the Galaxy Docker project: https://github.com/bgruening/docker-galaxy-stable/blob/master/galaxy/setup_postgresql.py Cheers, Bjoern Am 30.08.2016 um 11:56 schrieb Peter Cock: > Thanks Nicola & Peter B., > > I was hoping we could script new-user creation like this,

Re: [galaxy-dev] Send repeat parameter to code file for multiple select list

Hi Katherine, have a look at this one using repeats: https://github.com/bgruening/galaxytools/blob/master/tools/deseq2/deseq_helper.py Ciao, Bjoern Am 01.09.2016 um 13:58 schrieb Katherine Beaulieu: > Hello Galaxy Community, > I was wondering if anyone had ever come across a situation where

Re: [galaxy-dev] apache on ubuntu

Hi Ray, I added two lines to the following file: /etc/apache2/sites-available/000-default.conf it now looks like this: # The ServerName directive sets the request scheme, hostname and port that # the server uses to identify itself. This is used when creating #

Re: [galaxy-dev] Testtoolshed status

This has been fixed now, thanks Steve for the report and sorry for the trouble. Martin On Fri, Sep 2, 2016 at 10:20 AM Dave Bouvier wrote: > Steve, > > Thank you for reporting this issue, we've determined a potential cause > and are working to correct it. > > - > Dave Bouvier

Re: [galaxy-dev] apache on ubuntu

Hi Jochen, On Fri, Sep 2, 2016 at 8:32 PM, Jochen Bick wrote: > yes exactly. So my problem is that I have no idea where to copy those > settings. I have tutorial how it works on Centos but the file structure is > different on Ubuntu. Slightly different, but not too

Re: [galaxy-dev] Testtoolshed status

Steve, Thank you for reporting this issue, we've determined a potential cause and are working to correct it. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 09/02/2016 03:29 AM, Steve Cassidy wrote: I’m getting a 500 response from the testtoolshed when I try to upload a tool

Re: [galaxy-dev] apache on ubuntu

Hi Ray, yes exactly. So my problem is that I have no idea where to copy those settings. I have tutorial how it works on Centos but the file structure is different on Ubuntu. So I have my galaxy instance running on localhost:8080 (can also be moved to something else). If I run localhost or

[galaxy-dev] Testtoolshed status

I’m getting a 500 response from the testtoolshed when I try to upload a tool via planemo: ➜ alveo-galaxy-tools git:(master) ✗ planemo shed_update --shed_target testtoolshed apitools cd '/Users/steve/projects/alveo-galaxy-tools/apitools' && git rev-parse HEAD cd