[galaxy-dev] packaging R scripts

2016-02-26 Thread Xianrong Wong
Hi, I am trying to package an R script (that requires certain R packages) into a galaxy tool. Any advice would be deeply appreciated! I have tested it on planemo and it works. When I tried the version I uploaded onto the toolshed, I got an error saying that the R packages do not exist. I

Re: [galaxy-dev] correctly installing to toolshed

2016-02-25 Thread Xianrong Wong
Thank you! On Thu, Feb 25, 2016 at 7:50 PM, Karen Reddy <kred...@jhmi.edu> wrote: > Thanks! > > Sent from Nine <http://www.9folders.com/> > > *From:* Gildas Le Corguillé <lecorgui...@sb-roscoff.fr> > *Sent:* Feb 25, 2016 3:17 PM > *To:* Karen Reddy > *C

Re: [galaxy-dev] correctly installing to toolshed

2016-02-23 Thread Xianrong Wong
> > Hi, > > is the script rm_consecutive_sameScore.pl part of your TS repo and next > to your tool XML file or where is it stored? > > Thanks, > Bjoern > > Am 23.02.2016 um 17:46 schrieb Xianrong Wong: > > Hi, I'm new to publishing tools/repository on the tools

[galaxy-dev] correctly installing to toolshed

2016-02-23 Thread Xianrong Wong
Hi, I'm new to publishing tools/repository on the toolshed. I have used planemo and lint and tests as well as serve all worked. I was able to use the tool. However, when I uploaded it onto the test tool shed and imported the tool on a cloud instance, I keep getting this error when running job: