Re: [galaxy-dev] Bx-python and numpy eggs

Great, still need to figure out why. Thanks, Bjoern Am 27.11.2015 um 23:33 schrieb Jose Juan Almagro Armenteros: > Yes, I had that error but Devon Ryan point me out the solution in this > thread: https://biostar.usegalaxy.org/p/14989/. Now deepTools works > correctly for me. > > Regards, > > Jo

Re: [galaxy-dev] Bx-python and numpy eggs

Yes, I had that error but Devon Ryan point me out the solution in this thread: https://biostar.usegalaxy.org/p/14989/. Now deepTools works correctly for me. Regards, Jose 2015-11-27 22:01 GMT+01:00 Björn Grüning : > Awesome! > > Sorry for the inconvenience ...! > Is matplotlib installing for yo

Re: [galaxy-dev] Bx-python and numpy eggs

Awesome! Sorry for the inconvenience ...! Is matplotlib installing for you? Can you confirm this error? https://github.com/galaxyproject/tools-iuc/issues/417 Thanks, Bjoern Am 27.11.2015 um 18:21 schrieb Jose Juan Almagro Armenteros: > Hello Bjoern, > > Yes, that solved the problem. > > Thank

Re: [galaxy-dev] Bx-python and numpy eggs

Hello Bjoern, Yes, that solved the problem. Thank you! Regards, Jose 2015-11-27 17:59 GMT+01:00 Björn Grüning : > Hi Jose, > > can you please try to set: > > enable_beta_tool_command_isolation = True > > in your galaxy.ini file? > > Thanks, > Bjoern > > Am 27.11.2015 um 16:01 schrieb Jose J

Re: [galaxy-dev] Bx-python and numpy eggs

Hi Jose, can you please try to set: enable_beta_tool_command_isolation = True in your galaxy.ini file? Thanks, Bjoern Am 27.11.2015 um 16:01 schrieb Jose Juan Almagro Armenteros: > I bit more of information. I have this problem running tools from the last > version of deepTools (1.5.11.0) , as

Re: [galaxy-dev] Bx-python and numpy eggs

I bit more of information. I have this problem running tools from the last version of deepTools (1.5.11.0) , as bamCompare or bamCorrelate. However, when I run the same tools from the previous version (1.5.9.1.0), they work correctly. I have reinstalled this last version but nothing. Is it possible

Re: [galaxy-dev] Bx-python and numpy eggs

I have tried to remove the bx-python and numpy eggs and then I have fetched them again but this didn't work neither. Any idea why bx-python is not recognizing the proper numpy version? Regards, Jose 2015-11-27 0:53 GMT+01:00 Jose Juan Almagro Armenteros : > Hello, > > I am in the master branc

[galaxy-dev] Bx-python and numpy eggs

Hello, I am in the master branch and I recently pull all the changes to my local Galaxy. However, when I run one tool I obtained this error: Fatal error: Matched on Error: Traceback (most recent call last): File "/steno-internal/projects/galaxy/galaxy-dist/database/job_working_directory/024/24