Re: [galaxy-dev] Documentation of Galaxy API metadata objects

2015-10-01 Thread Carl Eberhard
Hi, Clare When working on the serializers and managers, I incorrectly moved the file_name attribute over as file_path. In a later commit, I re-added file_name and made file_path still available. Sorry for the confusion. They are the same variable under two different keys (the 'path' _remap uses t

Re: [galaxy-dev] Documentation of Galaxy API metadata objects

2015-10-01 Thread Clare Sloggett
Thanks Martin! I could have the details wrong for the API change example I gave (in fact, checking this was part of my motivation for asking about documentation, I wasn't sure whether our local setup was normal, and I would like our scripts to be reusable on other systems). But I'm fairly certain

Re: [galaxy-dev] Documentation of Galaxy API metadata objects

2015-09-30 Thread Martin Čech
Hi Clare, I am sorry but you seem to have found the best resources already. Namely 'what dictionary keys to expect...in a particular Galaxy version' is a hard problem with the current docs. :/ We could definitely do a better job providing example calls and responses in the docs with the code, so t

[galaxy-dev] Documentation of Galaxy API metadata objects

2015-09-30 Thread Clare Sloggett
Hi all, I'm wondering if there is any documentation of the JSON structures returned by particular Galaxy REST API calls. Some aspects of the Galaxy API are effectively documented via bioblend's structure, and others are documented at http://galaxy.readthedocs.org/en/master/api_doc.html . However