Hi again Peter,
John confirmed this was a mistake in the wrappers - for output
files .extra_files_path can be shortened to .files_path but this
is not yet possible for input files, see discussion on
https://github.com/peterjc/galaxy_blast/issues/69
I have updated the BLAST+ wrappers accordingly,
Thanks Peter for your very quick reply confirming that
workaround.
I'll wait to hear from John, as the real fix may be on the
Galaxy side, but we may need to push an update to the
Tool Shed to use the older .extra_files_path form in the
short term.
Thanks,
Peter
On Tue, Jul 21, 2015 at 7:22 PM,
Previous revision of ncbi_blast_plus works like a charm, thanks.
On 21 July 2015 at 19:57, Peter Cock wrote:
> Thanks Peter,
>
> Yes, you are using the latest release published to
> the Tool Shed, aka v0.1.03 (internal changes):
>
> https://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/c16
Thanks Peter,
Yes, you are using the latest release published to
the Tool Shed, aka v0.1.03 (internal changes):
https://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/c16c30e9ad5b
I've filed this as an issue on the GitHub repository,
https://github.com/peterjc/galaxy_blast/issues/69
If you
This is release_15.07 (last commit listed
is 39f6730e5f50b54f372b8c1e17d86d8936b5899f) and ncbi_blast_plus c16c30e9ad5b.
So no, its not an old Galaxy.
On 21 July 2015 at 17:37, Peter Cock wrote:
> Hi Peter v H,
>
> Which version of Galaxy are you running?
>
> Which version of ncbi_blast_tools ar
Hi Peter v H,
Which version of Galaxy are you running?
Which version of ncbi_blast_tools are you running? (ideally down to
the ToolShed revision)
My guess is that since this used to be .extra_files_path perhaps your
Galaxy is too old for .files_path to work?
https://github.com/peterjc/galaxy_bla
Hi there
I'm trying to use the blastp tools from the ncbi_blast_tools, but every
time I try and run a job I get the following error:
Traceback (most recent call last):
File "/net/
datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/runners/__init__.py",
line 163, in pre
