Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-11 Thread Suderman Keith
[Resending (again) as GMail keeps mangling my email address… sorry for triple posting...] Hi Björn, > Yes it is, but you need the :dev version, DOH, I should have known… > Can you explain what you delete? I do really support this idea as we are > also developing cheminformatics or imaging

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-11 Thread Suderman Keith
Hi Björn, > Yes it is, but you need the :dev version, DOH, I should have known… > Can you explain what you delete? I do really support this idea as we are > also developing cheminformatics or imaging flavours. Currently I think I have just removed the datatypes. I haven’t removed anything

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-11 Thread Suderman Keith
[Resending because GMail keeps mangling my email address…] Hi Björn, > Yes it is, but you need the :dev version, DOH, I should have known… > Can you explain what you delete? I do really support this idea as we are > also developing cheminformatics or imaging flavours. Currently I think I have

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-03 Thread Suderman Keith
Hi Björn, Have you pushed the new version to the Docker Hub? When I run the galaxy-stable image with the -e BARE=true option I still get a Galaxy instance with the default tools. Also, does this really give me a “bare” Galaxy instance, or just a Galaxy instance with an empty tool_conf.xml

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-02 Thread Suderman Keith
Hi Stephan, Thank you for the pointers, they will definitely help. Would you be willing to share any of the code you have for the upload tool? Will you be at the LREC conference in Portorož? It might be fun to arrange a meet up of all Galaxy users if we can. Cheers, Keith > On Mar 31,

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-01 Thread Björn Grüning
Hi Keith, with this PR merged https://github.com/bgruening/docker-galaxy-stable/pull/164 You can use the Galaxy Docker Image and pass in the -e BARE=True option. This will give you an production ready Galaxy Instance without tools, but with FTP Server, scheduler and activated TS. You could even

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-03-31 Thread Stephan Oepen
dear keith, in our work on building the Linguistic Analysis Portal (LAP) at the University of Oslo, we have had to confront the same two issues you mention. our general approach has been to separate LAP-specific code (and specifications) from the Galaxy tree as much as possible. for example, we