Re: [galaxy-dev] IE setup problem

Hello, Is there any docker container which include working IE with Apache Proxy? Thank you in advance. Best wishes, Mic On Wed, Dec 23, 2015 at 10:49 AM, Mic wrote: > Hello, > The images have been downloaded and stated, but now I get the following > error: > > > >

Re: [galaxy-dev] IE setup problem

Hi Bjoern, I tried *sudo docker ps, *but it shows nothing is running and I tried it multiple times to refresh Galaxy*. *Maybe I have to change docker to use without sudo? Thank you in advance. Mic On Wed, Dec 23, 2015 at 10:03 AM, Mic wrote: > Hello Eric, > I added

Re: [galaxy-dev] IE setup problem

Hello, The images have been downloaded and stated, but now I get the following error: *127.0.0.1 - - [23/Dec/2015:10:57:25 +1000] "GET /gie_proxy/ipython/login?next=%2F%2Fgie_proxy%2Fipython%2Ftree HTTP/1.1" 404 - "http://localhost/visualization/show/ipython?dataset_id=ba7576120c38e626

Re: [galaxy-dev] IE setup problem

Hi Mic, do you see in your logs that the image is fetched? For the first time this can happen if the IPython or RStudio image is not fetched and stored locally. Try again and check with `docker ps` if an image is started. Cheers, Bjoern Am 23.12.2015 um 01:03 schrieb Mic: > Hello Eric, > I

Re: [galaxy-dev] IE setup problem

Hello Eric, I added *interactive_environment_plugins_directory = /home/galaxy/galaxy/config/plugins/interactive_environments* to *galaxy.ini*. Now I got the below error while clicking Rstudio and Ipython. Please find attached my config files and I was not sure how to change apache proxy config

Re: [galaxy-dev] IE setup problem

Hi Mic, Some comments/questions after looking over your conf: * you've set "prefix" to /home/galaxy/galaxy, that prefix is used in web proxying (not in finding paths to on-disk galaxy stuff), so unless you're running under a url prefix like http://fqdn/galaxy/ you may not want to

Re: [galaxy-dev] IE setup problem

Hi Eric, Thank you for your email. I have Galaxy installed in */home/galaxy/galaxy* and Apache Proxy is setup for *localhost:8080*. I modified the Apache config file further for GIE: *RewriteEngine onRewriteRule ^/static/style/(.*)

Re: [galaxy-dev] IE setup problem

Hello, I was trying more, but still no luck. Please find attached the new config files. Thank you in advance. Best wishes, Mic On Tue, Dec 22, 2015 at 11:26 AM, Mic wrote: > Hi Eric, > Thank you for your email. I have Galaxy installed in */home/galaxy/galaxy* > and Apache

Re: [galaxy-dev] IE setup problem

Hi all, Thank you for the responses. If I would use "dynamic_proxy_manage_proxy=True" than Galaxy would execute automatically: /lib/galaxy/web/proxy/js/main.js --ip 0.0.0.0 \ --port 8800 --sessions $GALAXY_ROOT/database/session_map.sqlite \ --cookie galaxysession --verbose without the need to

Re: [galaxy-dev] IE setup problem

dynamic_proxy_manage_proxy=True is a terrible hack, I would set it to False and use supervisord if you have any inclination to at all. Like sqlite or the local job runner, it is just an attempt to make sure things work out of the box but it isn't that robust. -John On Sat, Dec 19, 2015 at 1:20

Re: [galaxy-dev] IE setup problem

... or is there is another way to start automatically nodejs without to use Supervisord? On Fri, Dec 18, 2015 at 3:58 PM, Mic wrote: > Hello, > I am using the latest stable Galaxy with PostgreSQL and Apache Proxy. I am > trying to follow this instruction >

Re: [galaxy-dev] IE setup problem

Hi, you need to have node installed. And then simply run: ./lib/galaxy/web/proxy/js/main.js --ip 0.0.0.0 \ --port 8800 --sessions $GALAXY_ROOT/database/session_map.sqlite \ --cookie galaxysession --verbose from your Galaxy root dir. Cheers, Bjoern Am 18.12.2015 um 06:58 schrieb Mic: >

[galaxy-dev] IE setup problem

Hello, I am using the latest stable Galaxy with PostgreSQL and Apache Proxy. I am trying to follow this instruction http://galaxy.readthedocs.org/en/master/admin/interactive_environments.html in order to be able to setup IE (Rstudio and Ipython). However, I do not know how to setup automatically