If anyone was wondering, I ended up sending the name of the repeat to the
function in the code file which is a list of dictionaries and in the
dictionaries you have an index and the other parameters in the repeat so as
long as you know the name of the parameters you are golden.
On Fri, Sep 2,
On Fri, Sep 2, 2016 at 9:07 PM, Katherine Beaulieu <
katherine.beaulieu...@gmail.com> wrote:
> Hi Bjorn,
> Thank you for taking the time to reply to my question. I don't think this
> quite fits what I am trying to accomplish. I am trying to pass a set of
> metadata key value pairs, where the user
Hi Katherine,
have a look at this one using repeats:
https://github.com/bgruening/galaxytools/blob/master/tools/deseq2/deseq_helper.py
Ciao,
Bjoern
Am 01.09.2016 um 13:58 schrieb Katherine Beaulieu:
> Hello Galaxy Community,
> I was wondering if anyone had ever come across a situation where
Ah - I understand what you mean now. Using the code tag is
discouraged, but you may find some of these examples useful
for what you are trying to do:
https://github.com/galaxyproject/galaxy/issues/2714
I hope that helps,
Peter
On Thu, Sep 1, 2016 at 2:37 PM, Katherine Beaulieu
On Thu, Sep 1, 2016 at 9:36 AM, Katherine Beaulieu <
katherine.beaulieu...@gmail.com> wrote:
> Hi Peter,
> The code file tag is generally used in populating select lists. So
> basically you have a function from a code file that is loaded before
> runtime of the tool and you can dynamically load
I'm not quite sure what you mean by a "code file", but if you
mean using the tag, here's an example:
https://github.com/peterjc/galaxy_mira/blob/master/tools/mira4_0/mira4_de_novo.xml
I am using a Cheetah syntax for loop to access each entry
in a repeat parameter.
Peter
On Thu, Sep 1, 2016 at
Hello Galaxy Community,
I was wondering if anyone had ever come across a situation where they have
had to pass the contents of a repeat parameter to a code file in a Galaxy
tool config? Is there any way to do this?
Katherine
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