Re: [galaxy-dev] _remove_dead_weakref error even after deleting .venv (Galaxy 18.09)

2018-12-12 Thread Peter van Heusden
I solved this problem by deleting the virtualenv in $GALAXY_ROOT and recreating it from one of my cluster worker nodes. System python on the worker nodes is 2.7.15rc1 from the Ubuntu 18.04 repository. System python on the Galaxy server is 2.7.12 from the Ubuntu 16.04 repository. Since the virtual e

[galaxy-dev] _remove_dead_weakref error even after deleting .venv (Galaxy 18.09)

2018-12-11 Thread Peter van Heusden
Hi there I'm trying to run Windowmasker in Galaxy and receiving the following error: "computing the genome length pass 1 pass 2 optimizing the data structure Traceback (most recent call last): File "/tools/software/galaxy/galaxy1/database/jobs/006/6476/set_metadata_bUlLkt.py", line 1, in f