Thanks!
Sent from Nine<http://www.9folders.com/>
From: Gildas Le Corguillé
Sent: Feb 25, 2016 3:17 PM
To: Karen Reddy
Cc: Xianrong; Björn Grüning; Xianrong Wong; galaxy-...@lists.bx.psu.edu
Subject: Re: [galaxy-dev] correctly installing to toolshed
Hi all,
You will found in attachme
sts.bx.psu.edu
> *Subject:* Re: [galaxy-dev] correctly installing to toolshed
>
> Hi all,
>
> You will found in attachment the modification, I proposed in my first
> email.
>
> As I said when your script is near your xm
rom: Karen Reddy <anotherpost...@gmail.com>Sent: Thursday, February 25, 2016 12:26 PMTo: Karen ReddySubject: Fwd: [galaxy-dev] correctly installing to toolshed -- Forwarded message --From: Xianrong Wong <won...@gmail.com>Date: Wed, Feb 24, 2016 at 2:26 PMSubject: Fwd: [galaxy-
Hi Bjoern, it's stored in the same folder as the .xml
Hi Gildas, that is the tool.
Thanks!
On Tue, Feb 23, 2016 at 12:43 PM, Gildas Le Corguillé <
lecorgui...@sb-roscoff.fr> wrote:
> Is it this tool :
> https://testtoolshed.g2.bx.psu.edu/view/xianrong/removing_consecutive_bins_with_same_score/c
Is it this tool :
https://testtoolshed.g2.bx.psu.edu/view/xianrong/removing_consecutive_bins_with_same_score/c19a0a942e1b
Gildas
-
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateforme ABiMS (Analyses and Bioinformatics for
Hi,
is the script rm_consecutive_sameScore.pl part of your TS repo and next
to your tool XML file or where is it stored?
Thanks,
Bjoern
Am 23.02.2016 um 17:46 schrieb Xianrong Wong:
> Hi, I'm new to publishing tools/repository on the toolshed. I have used
> planemo and lint and tests as well as
Hi Gildas,
thank you for the prompt reply! I actually have tried
multiple paths to the script, even just the script name as you suggested
but it's always giving the same error of "no such file or directory".
On Tue, Feb 23, 2016 at 11:51 AM, Gildas Le Corguillé <
lecorgui...@sb-r
Hi,
I think that you don’t need :
.$__tool_directory__/
rm_consecutive_sameScore.pl "$input1"
"$output1"
seems enough if you join the script .pl with your wrapper .xml
Gildas
-
Gildas Le Corguillé - Bioinformatician/Bioanalyste
P
Hi, I'm new to publishing tools/repository on the toolshed. I have used
planemo and lint and tests as well as serve all worked. I was able to use
the tool. However, when I uploaded it onto the test tool shed and imported
the tool on a cloud instance, I keep getting this error when running job:
