We had something similar breaking when using run-as-real-user,
where config/galaxy.ini setting external_chown_script which
defaults to scripts/external_chown_script.py was being run on
the cluster nodes using the system default Python.
Here we created a wrapper shell script which invoked the
Pytho
Hi Eric,
Take a look at this
https://docs.galaxyproject.org/en/master/admin/framework_dependencies.html#wheel-interaction-with-other-software
.
I hope that should be sufficient.
Cheers,
Marius
On 11 April 2016 at 14:25, Eric Kuyt wrote:
> Hi Marius,
>
> Now I ran in to some problems.
>
> When
Hi Marius,
Now I ran in to some problems.
When trying to change metadata of a file, the python path changes (these
tools run using drmaa) to the normal system version. Here tools are ending
in error becaus sqlalchemy.orm cannot be found. I can ofcourse install
sqlarchemy-python systemwide. But th
Thanks, works like a charm! Clean easy fix, Now why I couldn't come up
with this myself.
On 2 April 2016 at 11:49, Marius van den Beek
wrote:
> ld have been mentioned with the release notes.
> I didn't test this, but it might be sufficient to replace
> PYTHON="/usr/bin/python"
> with PYTHON=""
Hello Eric,
indeed this is an oversight, this should have been mentioned with the
release notes.
I didn't test this, but it might be sufficient to
replace PYTHON="/usr/bin/python"
with PYTHON="".
If that is sufficient for you, let us know and we will update the wiki and
adjust the script in
https:
Anything new about the init scripts.
Hey guys, today I updated to the latest version of galaxy. No I noticed
that because of the new virtualenv/wheel startup procedure, the init
scripts as mentioned here
https://wiki.galaxyproject.org/Events/GCC2012/TrainingDay/WS5?highlight=%28init.d%29
are not
Hey guys, today I updated to the latest version of galaxy. No I noticed
that because of the new virtualenv/wheel startup procedure, the init
scripts as mentioned here
https://wiki.galaxyproject.org/Events/GCC2012/TrainingDay/WS5?highlight=%28init.d%29
are not working anymore. Whet is the new start
