Hemant,
This is really odd, and definitely not what should be happening. Would
you mind sharing your history with me so I can take a closer look?
While I'm looking into it, you should be able to manually change the
database to ce6 and then run SAM-to-BAM. We have everything needed for
Hello Falak,
The tools in Text Manipulation, Filter and Sort, and Join, Subtract
and Group are designed to help with this type of file analysis (basic
stats). Please explore and let us know if you need help with any
particular tool,
Best,
Jen
Galaxy team
On 4/18/11 7:47 AM, Sher, Falak
Hi Thomas,
It turns out you discovered a bug in the cloud setup. We're missing a 2bit
file and a respective reference to the file for the extract genomic DNA
tool. We'll update the deployment but in the mean time you can configure the
instance yourself with just a few commands:
# connect to the
Take me off this list, please.
- Original Message -
From: Enis Afgan afg...@gmail.com
Date: Monday, April 18, 2011 1:41 pm
Subject: Re: [galaxy-user] database on the cloud
To: Randall, Thomas (NIH/NIEHS) [C] thomas.rand...@nih.gov
Cc: galaxy-user@lists.bx.psu.edu
Hello Falak,
There may be another issue regarding metadata display we would like to
confirm. Would you have time to share a link to your history? Options -
Share or Publish. You can send the link directly to me. Please note
which dataset is the Bowtie result in question, if there are multiple
Hello Vaibhav,
Genome assembly tools are available in the Galaxy Community Tool Shed.
http://community.g2.bx.psu.edu/
Look under Browse by category - Assembly.
Tools are donated by our user community and are designed to work on
local installs.
Vasu,
Please reply to the mailing list as emails to individual Galaxy
developers often get lost, and there are others on the list that might
be able to help you or benefit from this discussion.
Now, to your question: you're using the wrong GFF filtering tool,
which is an easy mistake to
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