Re: [galaxy-user] [galaxy-dev] Create and Transfer Galaxy Page

Todd, There's not an ideal solution for your situation. My suggestion: (a) set up a cloud instance with your tools + a Page and use the "share-an-instance" feature so that others can access your data, tools, histories, and page in a single place ( http://wiki.g2.bx.psu.edu/Admin/Cloud ); (b) pu

Re: [galaxy-user] how to do an enrichment analysis in Galaxy

Binnaz: Please, in the future forward such questions to galaxy-u...@bx.psu.edu mailing list. This is the most reliable way to get your queries answered. If you carefully go through http://usegalaxy.org/galaxy101 you will see how to count occurrences of features (such as LINES) within genomic r

[galaxy-user] How to replace ensembl gene ID with gene names in Cuffdiff output?

Hi all, I had the following Cuffdiff output from genes defferetial expression testing: test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 log2(fold_change) test_stat p_value q_value XLOC_01 XLOC_01 ENST0450305,ENST0456328,ENST0515242,ENST0518655 chr1:1186

Re: [galaxy-user] [galaxy-dev] Create and Transfer Galaxy Page

Jeremy - Thanks so much for your helpful responses. One problem that i didn't mention with implementing your suggestions is that the histories I want to post contain mainly new tools that my lab developed for phylogenetics using transcriptome data. Therefore, the public instance