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Hello,
You will need to provide a GTF or GFF3 file to Cuffdiff - this is what
the tool uses as a reference base to build gene, transcript, and if
provided in the annotation attributes, transcript start site and protein
groupings to perform the differential analysis.
More details can be found her
Hi,
As Admin, I uploaded a set of files from filesystems paths
Uploading is successful but when I try to make the datasets public I get
the following error:
Internal Server Error
Galaxy was unable to sucessfully complete your request <==By The
Way...NOTE how sucessfully is misspelled!!
URL:
ht
Nothing is wrong with your job, this is a bug in our code that has been
corrected. You'll start seeing the correct parameter values again when we
update our server early next week.
Best,
J.
On May 29, 2013, at 11:05 PM, Du, Jianguang wrote:
> Hi All,
> After I finshed Tophat alignment
Hello all -
I would like to evaluate Galaxy for integration with Ingenuity's NGS analytics
platform, and am trying to pull together some macro materials on how Galaxy has
been used and adopted by the community at large. Are there any presentations or
wiki pages that summarize basic stuff like:
Dear all,
Four days of training in genomics are occurring on our local instance of
Galaxy (27-30 May).
This training session takes place at INRA, Toulouse Auzeville, France,
as part of a collaboration between Sigenae (http://www.sigenae.org/) and
GenoToul bioinformatics platform (http://bio
Hi All,
After I finshed Tophat alignment for RNA-seq, I took look at the details of
parameters by clicking the icon "View details", and I got the information as
shown below:
Input Parameter Value Note for rerun
RNA-Seq FASTQ file 73: Filtered Groomed data1_rep2
Use a built in reference
> I have 40 fastq RNA-seq libraries uploaded in the galaxy mirror at UNC,
> however the tophat and cufflinks version in that server has not been
> updated for a while and I will like to use the main server at PSU.
> Do I have to upload the 40 files one by one again in the main galaxy or
> there any
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