Re: [galaxy-user] GTF-to-GFF3

2011-03-22 Thread Florent Angly
Speaking of which, could a Galaxy developer look at adding these changes, please? https://bitbucket.org/galaxy/galaxy-central/issue/447/new-tools-to-de-interlace-fastq-mate-pair Thanks, Florent On 23/03/11 12:02, Jeremy Goecks wrote: Alternatively, we welcome community contributions to the Gala

Re: [galaxy-user] GTF-to-GFF3

2011-03-22 Thread Jeremy Goecks
Karen, Sorry for the slow reply. There are no immediate plans to add either BED-to-GFF3 or GTF-to-GFF3 converters to Galaxy main or the Galaxy codebase. However, if you're working with your own Galaxy, you might encourage the Rätsch lab to contribute their tools to the Galaxy Tool Shed (http:/

Re: [galaxy-user] GTF-to-GFF3

2011-03-07 Thread Karen Tang
Hi Galaxy developers, Any plans on adding a GTF-to-GFF3 format conversion? This converter is at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Could it be made more widely available? Karen :) Dept of Plant Biology University of Minnesota