subject:"\[gmx\-users\] %hbond number problem"

Re: [gmx-users] %hbond number problem

2011-03-23 Thread Justin A. Lemkul

gromacs564 wrote: Dear Justin I download the script "plot_hbmap.pl" and input "perl $0 -s b4md.pdb -map hbmap.xpm -index hbond.ndx\n", but the output info is "Unrecognized switch: -bash (-h will show valid options)."; then,I input "perl\n plot_hbmap.pl -s b4md.pdb -map hbmap.

[gmx-users] %hbond number problem

2011-03-23 Thread gromacs564

Dear Justin I download the script "plot_hbmap.pl" and input "perl $0 -s b4md.pdb -map hbmap.xpm -index hbond.ndx\n", but the output info is "Unrecognized switch: -bash (-h will show valid options)."; then,I input "perl\n plot_hbmap.pl -s b4md.pdb -map hbmap.xpm -index hbond

[gmx-users] %hbond number problem

2011-03-23 Thread gromacs564

Dear Justin I download the script "plot_hbmap.pl" and input "perl $0 -s b4md.pdb -map hbmap.xpm -index hbond.ndx\n", but the output info is "Unrecognized switch: -bash (-h will show valid options)."; then,I input "perl\n plot_hbmap.pl -s b4md.pdb -map hbmap.xpm -index hbond.ndx\n"