Hi,
Thanks All for help.
Now is working!
Best!
tomek
On Tue, Feb 19, 2013 at 2:38 PM, Mark Abraham wrote:
> but this I got also with gromacs 4.5.5 which is running ok so I think this
>
> > is not a problem in my case.
> >
> > Like Alexey notice the problem is that my nodes have different
> >
but this I got also with gromacs 4.5.5 which is running ok so I think this
> is not a problem in my case.
>
> Like Alexey notice the problem is that my nodes have different
> architecture.. but this was not a problem with gromacs 4.5.5
>
Yes, that is expected. Probably both machines support SSE2,
Hi Tomek,
Gromacs 4.6 uses very different accelerated kernels to 4.5.5. These are
hardware specific and you must therefore select acceleration appropriate
for your hardware.
your login node will automatically use and select AVX-128-FMA
acceleration. However, your compute nodes are considerab
On Tue, Feb 19, 2013 at 1:32 PM, Tomek Wlodarski
wrote:
> The problem is that this is only message I got...
But that's an important error. GROMACS 4.6 depends a lot on the
compiler generated code, as opposed to 4.5 and previous which used
hand-written assembler code. The build procedure detects t
Hi All,
The problem is that this is only message I got...
I also get this Warning:
--
WARNING: Open MPI will create a shared memory backing file in a
directory that appears to be mounted on a network filesystem.
Creating the
Hi!
В письме от 16 февраля 2013 23:27:45 пользователь Tomek Wlodarski написал:
> Hi!
>
> I have problem in running gromacs 4.6 in PBS queue...
> I end up with error:
>
>
> [n370:03036] [[19430,0],0]-[[19430,1],8] mca_oob_tcp_msg_recv: readv
> failed: Connection reset by peer (104)
> --
On Sat, Feb 16, 2013 at 11:27 PM, Tomek Wlodarski wrote:
> Hi!
>
> I have problem in running gromacs 4.6 in PBS queue...
> I end up with error:
>
>
> [n370:03036] [[19430,0],0]-[[19430,1],8] mca_oob_tcp_msg_recv: readv
> failed: Connection reset by peer (104)
> ---
Hi!
I have problem in running gromacs 4.6 in PBS queue...
I end up with error:
[n370:03036] [[19430,0],0]-[[19430,1],8] mca_oob_tcp_msg_recv: readv
failed: Connection reset by peer (104)
--
mpirun noticed that process rank 1
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