Re: [gmx-users] MD with bilayer

Hi, VMD was built to work with NAMD, so the atom names and topologies will not work with GROMACS. I guess you better go to Peter Tieleman site ( http://moose.bio.ucalgary.ca/) and rad there how to do things. Cheers, Itamar On Tue, Nov 10, 2009 at 8:05 AM, Mark Abraham wrote: > parthi...@ncbs.re

Re: [gmx-users] MD with bilayer

parthi...@ncbs.res.in wrote: Hi I have constructed the bilayer with protein molecule in VMD. Can any one tell how to start MD from here. Follow the methods of whichever tutorial you learned from :-) the initial step - pdb2gmx is not working for this complex(pdb+membrane) We're not omnisci

[gmx-users] MD with bilayer

Hi I have constructed the bilayer with protein molecule in VMD. Can any one tell how to start MD from here. the initial step - pdb2gmx is not working for this complex(pdb+membrane) thanks in advance Parthiban -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman