RE: [gmx-users] Regarding lipid bilayer

2013-10-08 Thread Kukol, Andreas
] Regarding lipid bilayer Dear All, I am trying to follow lipid bilayer simulation tutorial,I am getting struck at energy minimization same step after generating system_inflated.gro file. I get the same error, Fatal error: Invalid line in system_inflated.gro for atom 6439: 25.67360

[gmx-users] Regarding lipid bilayer

2013-10-07 Thread hasthi
Dear All, I am trying to follow lipid bilayer simulation tutorial,I am getting struck at energy minimization same step after generating system_inflated.gro file. I get the same error, Fatal error: Invalid line in system_inflated.gro for atom 6439: 25.67360 25.77400 6.59650 I

Re: [gmx-users] Regarding lipid bilayer simulation

2013-10-06 Thread Justin Lemkul
On 10/6/13 12:47 AM, hasthi wrote: Dear GROMACS users, I have been trying to simulate protein of my interest in lipid bilayer(POPC) . I am following the tutorial of KALP-15 in DPPC. When I try to minimise the system after generating system_inflated.gro. I get a

[gmx-users] Regarding lipid bilayer simulation

2013-10-05 Thread hasthi
Dear GROMACS users, I have been trying to simulate protein of my interest in lipid bilayer(POPC) . I am following the tutorial of KALP-15 in DPPC. When I try to minimise the system after generating system_inflated.gro. I get a fatal error from grompp which reads