I loaded the .gro file generated after pdb2gmx command in vmd and then I
loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD
and when I click the play button on the toolbar the frames doesn't move ...
can anybody tell me how to play the simula tion in VMD ?? or where am i
goin
bharat gupta wrote:
I loaded the .gro file generated after pdb2gmx command in vmd and then I
loaded the .trr file into that molecule but it shows frame 1 vol 0 in
VMD and when I click the play button on the toolbar the frames doesn't
move ... can anybody tell me how to play the simula tion in
Of bharat gupta
Sent: Friday, 21 January 2011 2:42 PM
To: Discussion list for GROMACS users
Subject: [gmx-users] Visualizing the simulation in VMD
I loaded the .gro file generated after pdb2gmx command in vmd and then I
loaded the .trr file into that molecule but it shows frame 1 vol 0 in
VMD and
On Thu, Jan 20, 2011 at 7:44 PM, Justin A. Lemkul wrote:
>
>
> bharat gupta wrote:
>
>> I loaded the .gro file generated after pdb2gmx command in vmd and then I
>> loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD
>> and when I click the play button on the toolbar the fram
bharat gupta wrote:
After running the simulation I checked the trajectory in using ngmx in
some other system .. and it was working .. since I need to do some more
analysis during trajectory run on my protein I thought of running into
VMD and I used the file .trr after completng the simulat
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