[gmx-users] Visualizing the simulation in VMD

2011-01-20 Thread bharat gupta
I loaded the .gro file generated after pdb2gmx command in vmd and then I loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD and when I click the play button on the toolbar the frames doesn't move ... can anybody tell me how to play the simula tion in VMD ?? or where am i goin

Re: [gmx-users] Visualizing the simulation in VMD

2011-01-20 Thread Justin A. Lemkul
bharat gupta wrote: I loaded the .gro file generated after pdb2gmx command in vmd and then I loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD and when I click the play button on the toolbar the frames doesn't move ... can anybody tell me how to play the simula tion in

RE: [gmx-users] Visualizing the simulation in VMD

2011-01-20 Thread Dallas Warren
Of bharat gupta Sent: Friday, 21 January 2011 2:42 PM To: Discussion list for GROMACS users Subject: [gmx-users] Visualizing the simulation in VMD I loaded the .gro file generated after pdb2gmx command in vmd and then I loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD and

Re: [gmx-users] Visualizing the simulation in VMD

2011-01-20 Thread bharat gupta
On Thu, Jan 20, 2011 at 7:44 PM, Justin A. Lemkul wrote: > > > bharat gupta wrote: > >> I loaded the .gro file generated after pdb2gmx command in vmd and then I >> loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD >> and when I click the play button on the toolbar the fram

Re: [gmx-users] Visualizing the simulation in VMD

2011-01-20 Thread Justin A. Lemkul
bharat gupta wrote: After running the simulation I checked the trajectory in using ngmx in some other system .. and it was working .. since I need to do some more analysis during trajectory run on my protein I thought of running into VMD and I used the file .trr after completng the simulat