Re: [gmx-users] Where are the good tutorials?

2009-05-14 Thread Tsjerk Wassenaar
Casey, Could you expand your criticism? You must have found the tutorials section on the wiki. Then please note the specific points you dislike about the tutorials there (especially the beginners) and provide some ideas you would think improve them. To my opinion, a beginners tutorial provides a

Re: [gmx-users] Where are the good tutorials?

2009-05-13 Thread Rodrigo faccioli
The Gromacs tutorial is a good place for us who is stating. Another place is the Gromacs wiki which has a beginner section ( http://wiki.gromacs.org/index.php/Beginners). In this local, it's possible you to see some videos. I suggest for you read the online manual where has the flow chart and get

Re: [gmx-users] Where are the good tutorials?

2009-05-13 Thread Justin A. Lemkul
There are many: http://wiki.gromacs.org/index.php/Tutorials -Justin Joseph Johnson wrote: Are there any good tutorials that start from the very beginning, like assuming you only have a .pdb file? It seems that most of the tutorials I've found have already generated the files you need and th

[gmx-users] Where are the good tutorials?

2009-05-13 Thread Joseph Johnson
Are there any good tutorials that start from the very beginning, like assuming you only have a .pdb file? It seems that most of the tutorials I've found have already generated the files you need and then all you have to do is punch in some commands. Where can I learn to actually write the mol