RE: [gmx-users] density around protein

2009-04-05 Thread Dallas B. Warren
Or g_sdf Catch ya, Dr. Dallas Warren Department of Pharmaceutical Biology and Pharmacology Pharmacy and Pharmaceutical Sciences, Monash University 381 Royal Parade, Parkville VIC 3010 dallas.war...@pharm.monash.edu.au +61 3 9903 9167 - When the only tool you own is

Re: [gmx-users] density around protein

2009-04-05 Thread Matt Wyczalkowski
g_sorient returns the number of solvent molecules within a given distance range of a protein -- it may be what you are looking for. Matt 2009/4/5 Morteza Khabiri : > Dear gmxusers > > I want to calculate the density of solvent around protein. > I already tried the commands g_density and g_densmap

[gmx-users] density around protein

2009-04-05 Thread Morteza Khabiri
Dear gmxusers I want to calculate the density of solvent around protein. I already tried the commands g_density and g_densmap but the results are not the the things that I want. The g_density Compute partial densities across the box and g_densmap just give me one black and white photo which don't