Hello,
To investigate the secondary structure I issued the do_dssp command as
follows:
do_dssp_d_mpi -f AFPIII_Ih0001_81_93_NpT265.xtc -s
AFPIII_Ih0001_81_93_NpT265_1.tpr -o AFPIII_Ih0001_81_93_NpT265 -ssdump
AFPIII_Ih0001_81_93_NpT265
Then, I had read somewhere in the archive to select the
Paymon Pirzadeh wrote:
Hello,
To investigate the secondary structure I issued the do_dssp command as
follows:
do_dssp_d_mpi -f AFPIII_Ih0001_81_93_NpT265.xtc -s
AFPIII_Ih0001_81_93_NpT265_1.tpr -o AFPIII_Ih0001_81_93_NpT265 -ssdump
AFPIII_Ih0001_81_93_NpT265
Then, I had read somewhere in
Dear Justin,
Thanks a lot. Your comment was very instructive. So, I use Mainchain
(group 5) for future.
Paymon
On Wed, 2010-10-06 at 12:41 -0400, Justin A. Lemkul wrote:
Paymon Pirzadeh wrote:
Hello,
To investigate the secondary structure I issued the do_dssp command as
follows:
Hi
thanks Dr. van der Spoel my previous problem fixed.
I have another question.
I download DSSP from http://swift.cmbi.ru.nl/gv/dssp/ from the part
Distribution in the left partition of the page. it was the zip file and I
unzip it and positioned it in my /usr/local/bin and adjust the .bashrc.
Homa Azizian wrote:
Hi
thanks Dr. van der Spoel my previous problem fixed.
I have another question.
I download DSSP from http://swift.cmbi.ru.nl/gv/dssp/ from the part
Distribution in the left partition of the page. it was the zip file and I
unzip it and positioned it in my /usr/local/bin
Hi
when I use do_dssp the following error come:
Program do_dssp, VERSION 4.0.3
Source code file: do_dssp.c, line: 471
Fatal error:
Failed to execute command: /usr/local/bin/dssp -na ddS7CWeR dd48KVro
/dev/null 2 /dev/null
How could I fix this.
Thank you in advance.
--
Tehran University of
Did you download the dssp software from here ?
http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi
On Mar 10, 2009, at 1:12 AM, Homa Azizian wrote:
Hi
when I use do_dssp the following error come:
Program do_dssp, VERSION 4.0.3
Source code file: do_dssp.c, line: 471
Fatal error:
Failed to
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