Re: [gmx-users] angle between helices

2007-10-29 Thread Marc F. Lensink
On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote: Anupam Nath Jha wrote: Dear all can i calculate the angle between trans-membrane alpha-helices by using gromacs? Probably. Check out section 7.4 of the manual. i wrote a program for that. contact me off-list. as soon as i

Re: [gmx-users] angle between helices

2007-10-29 Thread David van der Spoel
Marc F. Lensink wrote: On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote: Anupam Nath Jha wrote: Dear all can i calculate the angle between trans-membrane alpha-helices by using gromacs? Probably. Check out section 7.4 of the manual. i wrote a program for that. contact me

Re: [gmx-users] angle between helices

2007-10-29 Thread Marc F. Lensink
On Mon, Oct 29, 2007 at 09:54:08AM +0100, David van der Spoel wrote: Marc F. Lensink wrote: On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote: Anupam Nath Jha wrote: Dear all can i calculate the angle between trans-membrane alpha-helices by using gromacs? Probably. Check out

Re: [gmx-users] angle between helices

2007-10-29 Thread Anupam Nath Jha
HI David there are options like g_helix, g_angle and as you said g_bundle, but none of them gives the angle between helix pairs. anupam Marc F. Lensink wrote: On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote: Anupam Nath Jha wrote: Dear all can i calculate the angle between

Re: [gmx-users] angle between helices

2007-10-29 Thread Alan Dodd
for GROMACS users gmx-users@gromacs.org Sent: Monday, October 29, 2007 10:37:13 AM Subject: Re: [gmx-users] angle between helices HI David there are options like g_helix, g_angle and as you said g_bundle, but none of them gives the angle between helix pairs. anupam Marc F. Lensink wrote: On Mon

Re: [gmx-users] angle between helices

2007-10-28 Thread Mark Abraham
Anupam Nath Jha wrote: Dear all can i calculate the angle between trans-membrane alpha-helices by using gromacs? Probably. Check out section 7.4 of the manual. Mark ___ gmx-users mailing listgmx-users@gromacs.org