, FI) would address the immediate need?
AD=Admitting
DI=Discharge
FI=Final
IN=Interim
NI=No information
UN=Unknown
OT=Other
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sation had
thus far, I think it's worthwhile to pursue Laurel's suggestion above.
Perhaps plus "PR" and "NP" for primary and nonprimary?
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d by GPC research in the near
term? Maybe sites that want these can just deal with them locally.
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Comment (by huhickman):
Attaching CSV per gcc-dev discussion.
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Batch modification to #182, #201 by dconnolly:
milestone to data-domains3
Comment:
moving these to data-domains3 in the process of closing drn-basic-query
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Changes (by gkowalski):
* status: reopened => closed
* resolution: => fixed
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Comment (by gkowalski):
We have completed this ticket.
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oads i2b2metadata2.cpt into
heron_terms. We commented that out and are instead loading
blueheronmetadata.umls_cpt, which was created by umls_cpt_concepts.sql
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ickman
huhick...@nebraskamed.com"
"Angela Bos
angela...@uthscsa.edu"
"Susan Morrison
susan.morri...@utsouthwestern.edu"
"Patrick Lenon
prle...@uwcarbone.wisc.edu"
"Jacquie Bohne
bohne.jacquel...@mcrf.mfldclin.edu"
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be required of all datamarts
before end of phase 1 assessing data quality by site. CDM V2
compliance will not be required before and of phase 1.
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Comment (by nateapathy):
For our i2b2 instances at Cerner we use Oracle.
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Comment (by ngraham):
KUMC uses Oracle.
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Comment (by dconnolly):
KUMC also operates babel, which runs postgres.
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udies
- CDM v1.0 DC queries ready for distribution by early April (SQL Server,
Postgres, Oracle)
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access to the SQL code.
https://datahandbook.epic.com//Reports/Details/9000297
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on procedures]
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ted
updates
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Comment (by dconnolly):
George, I meant to get confirmation today that all sites are ready on
this. Are you ready to run queries involving BMI percentile?
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new => assigned
Comment:
WISC (at least) to report experience on steps 1, 2 of Obesity query v0.2
this week.
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Comment (by lv):
MCRF uses Microsoft SQL Server for i2b2 instances.
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this intentional? or are the other
known races missing from the QA query? perhaps we need to use an updated
version)
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SQL for Tobacco type will follow later.
Jim
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is was assigned to me by default.
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esign is not consistent with
HackathonTwo design decissions. As he mentioned in comment:25,
Drs.Campbell(Jim and Scott) have put together their hierarchy.
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: data-sharing | Resolution:
Keywords:| Blocked By:
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--+
Changes (by bzschoche):
* cc: jsteinmetz (removed)
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k TracPermissions).
For reference: branch clarity_2014_3207, currently at 8e01143b39ba.
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re whatever else
you'd like to on the topic.
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this
at some point so that we can move on.
Phillip
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ink our BMI Percentiles lookups should be computed off the real
dates, and not adjusted dates.
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-TM
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al Encounter Types are stored in our Visit_Dimension table;
changes were made to accommodate this.
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Comment (by susandm):
So is this for discussion in the meeting tomorrow?
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Comment (by lv):
Yes; item 3 on the distributed agenda.
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Comment (by dconnolly):
Birthdates are shifted too; I don't see why there's a problem.
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t thought I had
was: how can we tell if we're doing this right or wrong?
Do you know if the Q1 query (#238) measures whether facts and encounters
are correlated correctly?
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l early days, and I think we're still figuring this out as we go,
but let's try to get more precise next time around.
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-TM
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ed
them using the deidentified data, joined the two result sets, and counted
the number of mismatched ages?
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Comment (by bokov):
San Antonio uses Oracle and Epic
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. I'd be willing to help next time to find a way to write such
queries in a way that is compatible with both Oracle and Netezza.
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Comment (by susandm):
PMN Data Mart Client v5 installed, tested connectivity to our pcornet data
mart
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Changes (by susandm):
* status: reopened => closed
* resolution: => fixed
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sql query text w/o the WI criteria */
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n the necessary test queries from the Coordinating
Center/Portal and returned results, and are now finalizing our Citrix
deployment in a test environment.
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:| Blocking: 232, 262
---+---
per gpc-dev call 14 Apr (see #12 for notes)
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s, so
I'm leaving the blocking relationship in place.
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as editing the milestone for two reasons:
1. to notify relevant people (trac doesn't send notifications when
milestones are edited)
2. to leave an audit trail (trac doesn't keep old versions of milestone
info)
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Comment (by lv):
Results for MCRF were sent to Tom on Wednesday, April 15.
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2015v6.sql:ticket:262
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dressing? If there's no
outstanding feedback that you know of, please close this ticket.
p.s. full email addresses work fine in the cc field, but for the owner
field, I much prefer to stick to trac account names.
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ISC now; do you have responses from any
other sites? If so, which?
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modifier
tree.
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in comment:17 (and, much
more detail in ticket:262#comment:8). Most comments are suggestions for
"next time", but there are a few things under "Possible Bugs" that I
thought would be worth review.
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ng at KU today.
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-quality | Blocked By:
Blocking: 232, 262 |
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* status: assigned => closed
* resolution: => fixed
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ince we've ended up with me entering these datasets by
hand.
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nosis\enctr_dx_discharge\
Encounter Diagnosis - Discharge
}}}
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ity_Query.sql Q1_2015_Quality_Query.sql] for the in-line code
changes).
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. But
perhaps relying on `c_basecode` is the cost-effective thing to do at this
point. I'm still mulling it over.
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KUMC.
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|
-+-
Comment (by dconnolly):
Still no word on the IRB (#271)? Then we're still at least two weeks away
from done. Milestone due date moves from May 11 to May 18.
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):
- UIOWA ETA Fri
- UMN: Can get it done by next Tuesday
- MCW: can run next week (week of April 27)
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right so we're trying to track down where the issue is at.
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__
e metadata/transitive
closure table.
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/file/36891223/ JAVA
transformation code] is generating null c_fullnames.
- There are missing trailing '\' in the paths.
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he blocking relationship isn't quite right, but it'll do for
now.''
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Batch modification to #133, #256, #263 by dconnolly:
priority to minor
Comment:
technical work on milestone:adaptable-accrual is on the back-burner pending
governance (#276)
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gpc-informatics
ding it to the
task of getting all the prep-to-research info from sites to PCORI. I
gather you're coordinating this, in coordination with Brittany.
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gpc-informatics <http://informatics.gpcnetwork.org/&
he SQL code here...
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Greater Plains Network - Informatics
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C:Diagnoses #63"
but don't understand the difference between Encounter and Billing.
Definitions of what to include for all would be helpful.
Thanks!
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gpc-informatics <http://informatics.gpcne
.
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start and stop dates are populated from the earliest-
observed encounter and latest-observed encounter.
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gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network -
pc-pcornet-
cdm/src/2b34bc7b71b13382b2cb697a10688fbc37f06c0d/CDM_transform_enrollment.sql?at=default#cl-20
CDM_transform_enrollment.sql line 20]
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gpc-informatics <http://informatics.gpcnetwork.org/>
<http://informatics.gpcnetwork.org/trac/Project/ticket/278#comment:10>
gpc-informatics <http://informatics.gpcnetwork.org/>
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aven’t had any
time to investigate the validity of this change and its quality.
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gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
_
in A1c (HbA1c) laboratory data
in CDM form.
This involves ensuring that the CDM ETL (#145) handles mapping from GPC
labs (#158) to CDM labs.
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gpc-informatics <http://informatics.gpcnetwork.org/>
Grea
t;http://informatics.gpcnetwork.org/trac/Project/ticket/191#comment:1>
gpc-informatics <http://informatics.gpcnetwork.org/>
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