Re: [gpc-informatics] #158: usable view of LOINC lab terms

database rather than returning any sort of error. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:34> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #210: Query by BMI percentile among children.

formatics.gpcnetwork.org/trac/Project/ticket/210#comment:30> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

twork.org/trac/Project/ticket/252#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #119: federated breast cancer query with manual term alignment

/119#comment:15> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

RL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #278: CDRN Survey_Bariatric Prep to Research Table

UMN opted out; CMH opted out - no survey from WISC; plan to participate? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/278#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Networ

Re: [gpc-informatics] #277: PCORnet antibiotic study: collect prep-to-research materials (was: SQL code for PCORnet antibiotic study)

Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/277#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #277: PCORnet antibiotic study: collect prep-to-research materials

: prakashnadkarni => dconnolly * status: reopened => accepted -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/277#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _

[gpc-informatics] #285: HbA1c and other laboratory data: data quality check, CDM ETL

lab designs we have considered (#158) don't have LOINC codes there. Let's put together a quality check, which serves as a failing test case for lack of lab support in CDM ETL, and then add this feature to CDM ETL. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ti

Re: [gpc-informatics] #158: usable view of LOINC lab terms

./GPC_LOINC_HIERARCHY.dsv 9d07adf37a04efe319324a36dcc48e12 *./GPC_LOINC_HIERARCHY.dsv }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:36> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics __

Re: [gpc-informatics] #285: HbA1c and other laboratory data: data quality check, CDM ETL

tus: new => assigned Comment: Tom to follow up w his local quality folks in Q2 context. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/285#comment:1> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Net

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

=> lv Comment: Laurel to get the latest from Bob and follow up with DSSNI if necessary. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Networ

Re: [gpc-informatics] #158: usable view of LOINC lab terms

pdated Java code is what I'm most interested in, since that's how we'd update to new versions of LOINC. I suppose others prefer to just get the resulting flat file. So delivering both would be best. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#com

Re: [gpc-informatics] #277: PCORnet antibiotic study: collect prep-to-research materials

of the output: attachment:PCORnet_antibiotic_study.2.sql​ -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/277#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-de

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

/ticket/240#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #103: subject of observation (e.g. maternal findings relevant to child)

t; 3. medication use during pregnancy Yes No > > c. Delivery type (vaginal v. cesarean)? Yes No > > d. Whether a child in your data set is a sib of another child in the data set? Yes No -- Ticket URL: <http://informatics.g

Re: [gpc-informatics] #103: subject of observation (e.g. maternal findings relevant to child)

ld you approach this? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/103#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@list

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

ttp://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:7> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #103: subject of observation (e.g. maternal findings relevant to child)

ill be shared with gpc-dev soon. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/103#comment:13> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

the counts to Alex. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listser

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

MCW doing on this? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listser

Re: [gpc-informatics] #232: Q1 2015 QA exercise

informatics.gpcnetwork.org/trac/Project/ticket/232#comment:24> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

x27;' New description: Dry-run of query and report back counts; see #250, #251 for details ''Dan, reporting based on discussion with Alex'' -- -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:12> gpc-informatics <http:

Re: [gpc-informatics] #263: Adaptable cohort query design and administration

`Visit Details \ Visit Vitals \ Last Menstrual Period \ Pregnant` in HERON/i2b2. There are also other pregnancy related concepts such as diagnoses. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/

Re: [gpc-informatics] #158: usable view of LOINC lab terms

https://pcornet.centraldesktop.com/c4gpc/file/40238135/ here]. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:38> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mai

Re: [gpc-informatics] #158: usable view of LOINC lab terms

: Keywords: | Blocked By: Blocking: 241, 285 | -+ Comment (by dconnolly): How about updated Java code? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:39> gpc-informatics

Re: [gpc-informatics] #158: usable view of LOINC lab terms

LOINC files in an Archive folder within the CMH folder to avoid confusion. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:40> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics __

Re: [gpc-informatics] #103: subject of observation (e.g. maternal findings relevant to child)

udy-data => Comment: return to back burner based on Russ's msg of Thursday, May 14, 2015 12:27 PM -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/103#comment:14> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plain

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:22> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://lists

Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

/56#comment:25> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #158: usable view of LOINC lab terms

hat your JAVA code only extracts Lab LOINC and ignores Clinical? Jim -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:41> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #158: usable view of LOINC lab terms

INC in a Cerner database. That mapping is do-able in i2b2, but falls outside the scope of what this ticket is looking for. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:42> gpc-informatics <http://informatics.gpcnetwork.org/>

Re: [gpc-informatics] #232: Q1 2015 QA exercise

cribe progress on data quality and validation. It was pretty easy to grab some useful text from your write-up. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/232#comment:25> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Netw

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by dconnolly): Nick writes Monday, May 18, 2015 11:27 AM: > ... as of now I have not heard back from any site regarding a verified mailing list. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:23> gpc-in

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by tmcmahon): So far 4 institutions have downloaded their files: UT Southwestern, UMN, MCRF, Iowa. Still awaiting download: MCW, UNMC, Wisc -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:24> gpc-informatics

Re: [gpc-informatics] #158: usable view of LOINC lab terms

n to rule out the approach that depends only on the flat file from the LOINC site. Angela, here's hoping you get around to adapting the UTHSCSA_umls branch to build this sort of code before I do. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:43&g

Re: [gpc-informatics] #155: correlating observations with encounters

ment that leads to a hospitalization, should be considered multiple encounters. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/155#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

uld have heard from MCW etc. on this by now; have you? from May 12 discussion: > MCW to complete by end of this week. > UMN to get back to it this week. > CMH will have update Tuesday. > WISC - in progress. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/2

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

asking them whether they need any help. There are still some edits I need to make to query-2, and then update the PDF instructions I sent out earlier. Seems like queries 1a and 1b work okay as-is. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:14&g

Re: [gpc-informatics] #278: CDRN Survey_Bariatric Prep to Research Table

: Keywords: bariatric-study | Blocked By: Blocking: | -+--- Comment (by mish): Completed and results sent off. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/278#comment:12> gpc-informatics

Re: [gpc-informatics] #278: CDRN Survey_Bariatric Prep to Research Table

: fixed Keywords: bariatric-study | Blocked By: Blocking: | -+- Changes (by mish): * status: assigned => closed * resolution: => fixed -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/278#commen

Re: [gpc-informatics] #266: CDM V3 Development for Phase 2

et URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/266#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.ed

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

-- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:25> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://lists

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

icket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:26> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

cket/227#comment:27> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #277: PCORnet antibiotic study: collect prep-to-research materials

): * status: assigned => closed * resolution: => fixed Comment: In today's call, Jim reports that he has what he needs on this. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/277#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/>

Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

it straightforward to share? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/56#comment:26> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listser

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by dconnolly): Nick, KUMC's verified mailing list is ready. Our tumor registrar is done looking it over. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:28> gpc-informatics <http://informatics.

Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

t;http://informatics.gpcnetwork.org/trac/Project/ticket/56#comment:27> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by tmcmahon): Update as of 27 May: MCW - accessed file UNMC - accessed file -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:29> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Pl

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

rac/Project/ticket/227#comment:30> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:31> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by jmcclay): Nebraska: 1) have not generated the mailing list - finally able to access the file 2 days ago 2) Registrar is waiting for our list. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:32> gpc-infor

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

tus update, please? Also Nate, Tom, Hubert? notes from last week's discussion (#12): - MCW: Confirm with George - CMH: Nate to check with Warren T. - WISC - in progress. - UNMC - Will check -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comm

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

week. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:16> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.k

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

nce: - [https://bitbucket.org/bos_uthscsa/survey_tracker survey_tracker on bitbucket] -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Networ

Re: [gpc-informatics] #266: CDM V3 Development for Phase 2

Documents] -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/266#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://lists

Re: [gpc-informatics] #266: CDM V3 Development for Phase 2

not aware of an analogous ticket for V2 like this one for V3. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/266#comment:7> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ G

Re: [gpc-informatics] #266: CDM V3 Development for Phase 2

DM v3 and v2 is largely passe´. In particular, the prep for the obesity studies (#277, #278) was all w.r.t. v3. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/266#comment:8> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Netw

Re: [gpc-informatics] #266: CDM V3 Development for Phase 2

t:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #291: Gather 2015 2nd quarterly QA results

g/trac/Project/ticket/291#comment:3> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #243: GPC Procedure Ontology: CPT, HCPCS

nch, see umls_hcpcs_concepts.sql Latest UTHSCSA terms are now deployed to Babel, including the HCPCS terms for Procedures. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/243#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Greater

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

: <http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:17> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mail

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

t;http://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:18> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

ool. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:8> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://li

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

- I suppose that's consistent with putting GPC enrollment terms under demographics (#229). - HISP: over 50% NI - ENC: why is encounterid not unique??? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:9> gpc-informatics <http://informatics.gpcne

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

: -+- Comment (by bos): All 9 queries work for the UTHSCSA current CDM build. We have the same issues with ENROLL and ENC. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Gr

Re: [gpc-informatics] #242: CDM V2 SNOMED CT Conditions compliance

242#comment:15> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

** 1. **UTHSCSA: working on IRB modifications. yet to receive randomized list** 1. **UTSW : list validation ETA: this week.** -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:33> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Pl

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Changes (by dconnolly): * owner: nicholas-rudzianski => jmcclay Comment: UNMC: JM - list validation ETA Thursday (Jun 4) -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:34> gpc-informatics <http://informatics.gpcnetwork.o

Re: [gpc-informatics] #80: assessment of GPC vs. data privacy and security standards

all sites fill out the survey (comment:18) within a week or two of our 2 Jun call (#12). MCW in particular offered to fill it out. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/80#comment:20> gpc-informatics <http://informatics.gpcnetwork.org/> Greater

Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

omment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #284: Deploy GPC ALS Survey at GPC sites

T 2015 -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/284#comment:2> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http:/

Re: [gpc-informatics] #291: Gather 2015 2nd quarterly QA results

ment:4> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #291: Gather 2015 2nd quarterly QA results

Oracle systems (specifically KUMC) should be available on Bit Bucket at the end of this week. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/291#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network -

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

ory; some changes expected shortly. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev maili

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

DM V3 Dispense and Prescribe Tables require medication data elements not represented in what is rolled out at KU. I'm still a little fuzzy on which data elements those are and whether they're required to answer research questions of interest. -- Ticket URL: <http://informati

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

RL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #80: assessment of GPC vs. data privacy and security standards

ect/ticket/80#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

| -+- Comment (by tmcmahon): Iowa, UMN and MCW received study ids. Other sites are still working on completing the validation and/or internal review. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/227#comment:35> gpc-informatics

Re: [gpc-informatics] #284: Deploy GPC ALS Survey at GPC sites

meeting). ''from today's teleconferece (#12)'' -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/284#comment:3> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

in #250, I don't see it on babel. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev

[gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

t URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/293> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

: | Blocked By: Blocking: | ---+--- Changes (by lv): * owner: dconnolly => lv * status: new => assigned -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/293#comment:1> gpc-infor

Re: [gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

g/trac/Project/ticket/293#comment:2> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

each site on the "Data Description" tab, rows 8 and 9, respectively. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/293#comment:3> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _

Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata

bel. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/109#comment:30> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http:

Re: [gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

t;http://informatics.gpcnetwork.org/trac/Project/ticket/293#comment:4> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

no longer assigned to the first 300 per bin -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:14> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc

Re: [gpc-informatics] #293: Report SAS and RDBMS version and packages to DSSNI

duction -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/293#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

| Resolution: Keywords:| Blocked By: Blocking: 254 | --+- Changes (by bos): * owner: bos => huhickman -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:15> gpc-in

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

testing things. I do not anticipate further major updates. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:16> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

<http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:17> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

module named '__builtin__' sounds like another python-3-ism. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:18> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

open as openrd }}} That code is ok for Python 2.7. (at least the import, I've not yet tried to run any of the Python yet) I did pull down the latest from BitBucket. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:19> gpc-i

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

ttp://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:20> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #253: obesity survey REDCap tracker and tools

Angela to work through some of these via email/screensharing? Sure, please email me to setup a screen sharing session. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Pl

Re: [gpc-informatics] #240: Data Characterization queries for phase 1 CDM V1 compliance

- query package will apparently hit both CDMv1 and some CDM v2 fields - GPC DSSNI liaison call rescheduled for july 10 -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Pl

Re: [gpc-informatics] #191: represent PCORI CDM 2.x terminology as i2b2 metadata

+i2b2+PCORnet+Common+Data+Model+Ontology+Home SCILHS i2b2 PCORnet Common Data Model Ontology]. He said they're working on v2 and v3; ETA next couple months. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/191#comment:2> gpc-informatics <http://informatics.

[gpc-informatics] #295: breast cancer correspondence between EHR and tumor registry variables - i2b2 query

breast cancer diagnosis. We didn't get breast cancer DX from from the EMR in the 1st data pull (#204), so let's do another. ''promoting from ticket:265#comment:7 to its own ticket'' -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/

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