Re: [gmx-users] metal ions in equilibration step

2017-06-06 Thread Justin Lemkul
On 6/6/17 8:22 AM, Mahboobeh Eslami wrote: Hi all GMX usersI want to do MD simulation on protein-ligand complex. There are two calcium ions in the protein structure. These ions play an important role. In the equilibration step, should I consider protein,ligand and calcium ions as one single

[gmx-users] metal ions in equilibration step

2017-06-06 Thread Mahboobeh Eslami
Hi all GMX usersI want to do MD simulation on protein-ligand complex. There are two calcium ions in the protein structure. These ions play an important role. In the equilibration step,  should I consider protein,ligand and calcium ions as one single entity (for tc_grps option)? or should I consi