Dear Georgos, Francesco, and all,
I think both problems are now resolved.
Georgos pointed out an error in the use of a gradiometer montage, which
helped.
Finally, using the structure of the empty-room noise covariance when
normalising signal power seems to remove any of the unusual structure in
Hi Satra
It does. It does not support however out latest model that we intend to use and
I think it does not directly support a multi-GPU environment.
Cheers
Stam
On 17 Feb 2015, at 15:29, Satrajit Ghosh sa...@mit.edumailto:sa...@mit.edu
wrote:
hi stam,
quick follow up here: does the
Dear HCP team members,
Sorry for bothering you all again. But this time the analysis got stuck in
its initial FreeSurfer processing with the following error:
/xxx/xxx/xxx/xxx/HCP_data/scripts/Pipelines-3.4.0/FreeSurfer/FreeSurferPipeline.sh:
line 78: recon-all: command not found.
Ful details of
Hi Derek
In the HCP released data, there is a T1w/Diffusion directory.
If you do
bedpostx T1w/Diffusion -n 3 -model 2 -g —rician
that should run fine. Notice that even if you run that on a big cluster, it
will take a significant amount of time to finish because of the dimensions of
the data.
hi stam,
quick follow up here: does the current bedpostx_gpu (under 5.0.7/8) not
support these flags?
a previous discussion on the fsl mailing list suggested that it did.
cheers,
satra
On Tue, Feb 17, 2015 at 10:26 AM, Stamatios Sotiropoulos
stamatios.sotiropou...@ndcn.ox.ac.uk wrote:
Hi
Are you running the command on ${StudyFolder}/${Subject}/T1w/Diffusion ?
You’ll need the latest version of FSL 5.0.8 on your cluster as well.
Peace,
Matt.
From: Archer, Derek B arche...@ad.ufl.edu
Date: Tuesday, February 17, 2015 at 11:53 AM
To: Matt Glasser glass...@wusm.wustl.edu,
What are your environment variables immediately before calling the main
FreeSurfer.sh pipeline script?
Peace,
Matt.
On 2/17/15, 11:47 AM, Donna Dierker do...@brainvis.wustl.edu wrote:
Sounds like it can't find the freesurfer executables. This page might
help:
