[HCP-Users] Diffusion Preprocessing

2015-06-18 Thread levi solomyak
Hello, I am working on running the diffusion preprocessing pipeline using the script from https://github.com/Washington-University/Pipelines/blob/master/Examples/Scripts/DiffusionPreprocessingBatch.sh as a reference. When it is supposed to copy the positive raw data to the working directory I kee

[HCP-Users] Myelin mapping with FLAIR

2015-06-18 Thread Michael Dwyer
Dear HCP experts, First, I would like to thank you all for a great and informative course last week. I really enjoyed the interleaved lectures and practicals, and everything was extremely well organized I think Matt had mentioned during the course that the T1/T2 myelin mapping could also work wit

Re: [HCP-Users] Myelin mapping with FLAIR

2015-06-18 Thread Xu, Junqian
You can take a look at the UK Biobank project FLAIR protocol first and start your site-specific piloting from there. http://users.fmrib.ox.ac.uk/~steve/BiobankPiloting/ On Jun 18, 2015, at 10:56 AM, Michael Dwyer mailto:mgdw...@bnac.net>> wrote: Dear HCP experts, First, I would like to thank

Re: [HCP-Users] Myelin mapping with FLAIR

2015-06-18 Thread Michael Dwyer
Thanks for the quick reply! Unfortunately, we have a GE scanner, not a Siemens. Any advice for that? Also any different recommendations for the post-processing when using FLAIR? Best, Mike On Thu, Jun 18, 2015 at 5:04 PM, Xu, Junqian wrote: > You can take a look at the UK Biobank project FLAIR