Hi Michael,
In the first case the option "-transposedata" should fix the problem. In
the second case, with "-evperdat", it seems the dimensions of the input and
of the voxelwise EV don't match.
Please, when quoting, send the full error message, including particularly
those seemingly cryptical lin
Dear List,
When a lab analyzes their own data, they control for the degradation in
confidence due to multiple comparisons.
But how does that work when you have many labs analyzing the same data?
At the one end, several labs could do exactly the same analysis and get the
same results.
At the oth
Hi Michael,
I assume that each cope map is viewable in Connectome Workbench... that is to
say that each CIFTI cope has 91282 rows and 1 column.
For the recent HCP Course, we suggested merging the individual subject copes
into a dtseries with 91282 rows x S columns, where S was the number of sub
Dear Don,
There are no simple answers to this question. Firstly, always be totally
transparent about the set of questions/contrasts you're investigating when
you write up your results. But, when it comes to decide over what set of
results to control multiple testing, I don't think you need to nai
Dear HCP Experts,
I was wondering if it might be possible to obtain the r values that were
used to determine the colors of the task pos/neg of the parcellation atlas
(HCP_MMP1.0). If that data already exists, could you please let me know
what the name of the file is.
I am asking for this because
Hi Tim,
This has worked great until the last step: did you mean wb_command
-cifti-change-timestep? I can't find a -cifti-change-mapping command, and if I
try it it tells me "ERROR: Command '-cifti-change-mapping' not found"
Thanks for the detailed instructions some far!
Best
Rod
On 12 Sep 20
Thank you very much. When I merge my cope files I was getting the same errors
as before when I ran the following command:
palm -i TGNGcope1.dtseries.nii -transposedata -fdr -d
$LevelThreeFEATDir/design.mat -t $LevelThreeFEATDir/design.con -T -ise
When I removed the "-t $LevelThreeFEATDir/desi
Hi HCP experts -
I was wondering whether I could reprocess an old study using the HCP pipelines
or parts of them. I have task, resting, HARDI and field maps, but don’t have a
T2w anatomical image. I would like to get CIFTI files and do the best possible
registration of them.
Could you please adv
I was mistaken; the command gives this error when I use the option -T to run
TFCE, and palm runs smoothly when I do not use that option. Once again the
error is:
Building null distribution.
0.01% [Design 1/1, Contrast 1/1, Shuffling 1/1, Modality 1/1]
Saving file: palm_dat_tstat
Index excee
