Re: [HCP-Users] Calculation of myelin maps

Are you using Myelin or MyelinMap_BC? For finding brain areas use Myelin_BC, for statistics on the myelin itself you will want to use MyelinMap. Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Lisa Kramarenko mailto:lisa.kramare...@gmail.com>> Date: Thursday, J

Re: [HCP-Users] Flat Maps

Hi Claude et al., 1) The atlas template flatmaps surfaces are available at https://github.com/Washington-University/Pipelines/tree/master/global/templates/standard_mesh_atlases 164k: colin.cerebral.L.flat.164k_fs_LR.surf.gii

Re: [HCP-Users] saving one of the .dconn maps as a separate cifti?

The -cifti-separate command is for getting sections of a cifti file as gifti (single hemisphere) or nifti (volume) files, and it is generally not a good idea to run it on dconns. The -cifti-merge command is how you would do this on the command line, and you would give it the row index (though if t

Re: [HCP-Users] Single Subject Parcellation

Hi Nicolò, Matt Glasser did have a lecture on applying his multimodal group parcellation MMP1.0 (see https://balsa.wustl.edu/study/show/RVVG) to individual subjects at the HCP Course. We intend to make a pipeline that does this and run it on all HCP subjects, but it is in a long list of priori

[HCP-Users] Single Subject Parcellation

Hi, I am Nicolò Biagi, a PhD student at the University of Reading (UK). I am writing to you because I've seen that you presented the Single Subject Parcellation at the 2017 HCP Course: "Exploring the Human Connectome", held in June in Vancouver, and I'd like to ask you if is now possible to us

Re: [HCP-Users] saving one of the .dconn maps as a separate cifti?

This is very useful, thank you very much for the quick and very helpful reply! Xavier. From: Elam, Jennifer [e...@wustl.edu] Sent: Thursday, July 13, 2017 11:21 AM To: Xavier Guell Paradis; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] saving one of the .dc

Re: [HCP-Users] saving one of the .dconn maps as a separate cifti?

Hi Xavier, When you have the .dconn file open in wb_view and have clicked on the desired seed location, click on the Connectivity tab in the Overlay Toolbox, then click the "Copy" button next to the loaded .dconn file listed. [https://outlook.office.com/owa/?realm=wustl.edu] Then go to File -

[HCP-Users] saving one of the .dconn maps as a separate cifti?

Dear HCP experts, I have the 33GB .dconn file, have clicked in one place in the cerebral cortex and now I am seeing a connectivity map in the cerebral cortex and subcortical structures. The map is called "Row: 27597, Node Index: 30393, Structure: CORTEX_LEFT". Is it possible to access this map s

Re: [HCP-Users] Calculation of myelin maps

(just a correction: flip angle 9°, not 90 for MPRAGE) On 13 July 2017 at 12:19, Lisa Kramarenko wrote: > Dear Matt, > > I completed all three structural pipelines and performed PALM comparison > for myelin maps. However, the result I got was somewhat opposed to > expectations (patients with earl

[HCP-Users] Calculation of myelin maps

Dear Matt, I completed all three structural pipelines and performed PALM comparison for myelin maps. However, the result I got was somewhat opposed to expectations (patients with early MS having significantly stronger myelination compared to healthy controls). I wondered that maybe something in ou

[HCP-Users] Calculation of myelin maps

Dear Matt, I completed all three structural pipelines and performed PALM comparison for myelin maps. However, the result I got was somewhat opposed to expectations (patients with early MS having significantly stronger myelination compared to healthy controls). I wondered that maybe something in ou