Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh

Yes, it needs a new argument after bandpass, TRUE or FALSE for whether to do motion regression. Tim On Tue, Nov 13, 2018 at 4:19 PM, Jayasekera, Dinal < dinal.jayasek...@wustl.edu> wrote: > Tim, > > > I forgot to mention this but with the addition of the motion regression > argument to the hcp_

Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh

Tim, I forgot to mention this but with the addition of the motion regression argument to the hcp_fix script you linked, some changes have to be made to the order and number of positional arguments being called by ./IcaFixProcessingBatch.sh right? Kind regards, Dinal Jayasekera PhD Candidate

Re: [HCP-Users] Convert subject-specific ICA node maps to volumetric space?

-cifti-convert does not do this, it only dumps the matrix into different file formats as-is, the spatial relationships are not accessible from its output. If you are only interested in subcortical/cerebellum data, that is trivial to extract from cifti as a volumetric nifti using -cifti-separate wi

Re: [HCP-Users] Convert subject-specific ICA node maps to volumetric space?

Thank you Steve, I was hoping to get them out of the CIFTI versions (also so I don't have to reprocess the 4D FIX data for all subjects). Maybe with cifti-convert? The brain would not be fully covered here i realise but much better than nothing. Alternatively, do you think there is a chance

Re: [HCP-Users] Convert subject-specific ICA node maps to volumetric space?

Hi - we calculated them in order to estimate the volumetric group maps. However AFAIK we didn't bundle them in the PTN release. You can easily get them though by regressing node timeseries into 4D FIX-cleaned data. Cheers. > On 13 Nov 2018, at 16:09, Nicola Toschi wrote: > > Dear HCP list

[HCP-Users] Convert subject-specific ICA node maps to volumetric space?

Dear HCP list and experts, I was wondering if the subject-specific node maps from the latest PTN release (which are available in CIFTI format) are also available in volumetric space (which would aid the specific analysis we are running). Or if not, maybe a pointer on how to convert them? Thank

Re: [HCP-Users] Q about relational processing task

Hi Moataz, We just reviewed the stimuli and there are indeed some trials in which the top stimuli differ on two dimensions. --Greg Greg Burgess, Ph.D. Staff Scientist, Human Connectome Project Washington University School of M

[HCP-Users] Postdoctoral position in neuroimaging/addiction at McLean Hospital/Harvard Medical School.

Postdoctoral position in neuroimaging/addiction at McLean Hospital/Harvard Medical School. The Functional Integration of Addiction Research Laboratory (FIARL) at McLean Hospital is seeking a postdoctoral fellow to join our expanding research group within the McLean Imaging Center. FIARL is focus