Did you update to the latest version of FIX from FSL’s website?
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of Marta Moreno
mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 31, 2019 at 6:44 PM
To: HCP Users
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Use
Dear Experts,
I am running hip_fix and getting the following error with just one of my
subjects, please see below. It seams the script stoped at the end, in section
"Rename some files (relative to the default names coded in fix_3_clean)”, first
line: "$FSLDIR/bin/immv ${fmrihp}.ica/filtered_fun
I’d like Tim’s input on where to upload if you don’t have your own convenient
spot.
Matt.
From: Shachar Gal mailto:gal.shac...@gmail.com>>
Date: Sunday, March 31, 2019 at 10:58 AM
To: Matt Glasser mailto:glass...@wustl.edu>>
Subject: Re: [HCP-Users] wb_command -cifti-resample in sub-cortical pro
We need the input files to the command that is taking too long. Also, does the
problem happen reproducibly?
Matt.
From: Shachar Gal mailto:gal.shac...@gmail.com>>
Date: Sunday, March 31, 2019 at 10:53 AM
To: Matt Glasser mailto:glass...@wustl.edu>>
Subject: Re: [HCP-Users] wb_command -cifti-res
Perhaps you should upload the various input files to the specific wb_command
command somewhere so we can test them if this issue is reproducible (i.e. is
not a random thing from bad RAM or something like that).
Matt.
From: Shachar Gal mailto:gal.shac...@gmail.com>>
Date: Sunday, March 31, 2019
How did you call fMRISurface and what kind of data is this in terms of spatial
and temporal resolution? Do the input and template data line up and look
reasonable?
Matt
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of Shachar Gal mailto:gal.shac...@gmail.com>>
Date: Sunday,
some further information that might be useful - the output file
rfMRI_REST_AP_temp_atlas.dtseries.nii, has already been created. its in the
target folder. but the command won't stop "running"
On Sun, 31 Mar 2019 at 16:13, Shachar Gal wrote:
> Dear experts,
>
> while running the fMRISurface pipel
Dear experts,
while running the fMRISurface pipeline (using the latest pipeline release)
I encountered an issue where the subcortical-processing script takes a
really long while (now running for more than 6 hours).
this is the command on which it is stuck
${CARET7DIR}/wb_command -cifti-resamp
