r the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO 63110Email: mha...@wustl.edu
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Tuesday, May 31, 2016 at 10:12
173
St. Louis, MO 63110Email: mha...@wustl.edu
From: <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Dierker,
Donna" mailto:do...@wustl.edu>>
Date: Tuesday, May 31, 2016 at 9:30 AM
To: Barbara Kreilkamp <mailto:bakk@googlemail.com>>, &q
Dear HCP experts,
I am running freesurfer-Darwin-lion-stable-pub-v5.3.0 on MAC 10.10.5.
Could you please help me with this error message? I think it relates to
the library, this is what it states in talairach_avi.log.
Running recon-all directly worked, but after that I am missing some
files th
Matt.
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Friday, January 15, 2016 at 9:46 AM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: "Van Essen, David" <mailto:vanes...@wustl.edu>>, Timothy Coalson <mailto:tsc...@mst.edu>>, &
Maybe post your PreFreeSurfer pipeline launch variables.
Peace,
Matt.
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Thursday, January 14, 2016 at 6:11 AM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: "Van Essen, David" <mailto:vanes...@wustl.edu>
on this please?
Thank you,
Best wishes,
Barbara
On Wed, Jan 13, 2016 at 11:07 AM, Glasser, Matthew
wrote:
> Indeed sorry Barbara!
>
> Matt.
>
> From: David Van Essen
> Date: Tuesday, January 12, 2016 at 11:27 PM
> To: Matt Glasser
> Cc: Timothy Coalson , Barbara Kreil
elines_ExampleData/C10/T1w/ACPCAlignment (the entire directory)
> Pipelines_ExampleData/C10/T1w/T1w.nii.gz
> Pipelines_ExampleData/C10/T1w/T1w_acpc.nii.gz
>
> Tim
>
>
> On Fri, Jan 8, 2016 at 6:15 AM, Barbara Kreilkamp > wrote:
>
>> They are in the file HCP_Boundig_
They are in the file HCP_Boundig_Box_error
Thank you,
Best wishes,
Barbara
On Fri, Jan 8, 2016 at 12:12 PM, Barbara Kreilkamp
wrote:
> Thank you very much for looking into it.
> I have now uploaded the files.
>
> Thank you,
> Best wishes,
> Barbara
>
> On Wed, Jan 6, 2
>> -surface-apply-warpfield is too large for the specified warpfield volume,
>> and thus some vertices would have undefined coordinates if it proceeded
>> with the transformation.
>>
>> Tim
>>
>>
>> On Wed, Jan 6, 2016 at 4:47 AM, Barbara Kreilkamp <
&g
Dear HCP experts,
Thank you for all your help so far.
Unfortunately I am running into an error in PostFreeSurferPipelineBatch.sh
I wonder if you could please help me solve this issue? Other participants
with the same data have run without any issues, and the
FreeSurferPipelineBatch.sh completed wi
.
Please find all details about this position via this link:
http://www.findaphd.com/search/ProjectDetails.aspx?PJID=70289&LID=3417
*Deadline:* Friday, January 22, 2016 - apply ASAP!
Best wishes and a Happy New Year!
Barbara Kreilkamp
PhD researcher
University of Liver
Dear all,
I've acquired the T1w and T2w images on the GE scanner, additionally, as
advised we've acquired a B1 field map.
I've been trying to use the HCP tools for volume to surface registration of
the B1 map, but so far have had no success. I found an mri_vol2surf
co-registration algorithm used w
_
> > gaurav patel
> > gauravpa...@gmail.com
> > www.neurofreak.net
> >
> >
> >
> >
> >On Nov 19, 2015, at 11:27 AM, Barbara Kreilkamp wrote:
> >
> >> Dear all,
> >>
> >> We've now been abl
Dear all,
We've now been able to acquire a sagittal B1-Map from the GE templates
protocols (GE 3Tesla 750 Discovery).
I hope this is the right sequence that would tell us where the
high-intensity artifact in the GE myelin maps come from?
The raw data is here:
https://app.box.com/s/3t3o77b1ksrhgfs
teral part
> doesn¹t. I think we¹ll need to find out more about the transmit field, as
> that is likely the issue.
>
> Matt.
>
> On 6/1/15, 11:48 AM, "Barbara Kreilkamp" wrote:
>
>> Thank you so much to both of you.
>> Online I also found the information
or this GE scanner? In the Siemens scanners
we use the more uniform transmit from the body coil, but if the head
coil were used for transmit, it could produce a more inhomogeneous field.
Peace,
Matt.
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Sunday, May 31, 2015 at
...@wustl.edu>>
Date: Wednesday, May 6, 2015 at 9:30 PM
To: Matt Glasser <mailto:glass...@wusm.wustl.edu>>, Barbara Kreilkamp
mailto:bakk@googlemail.com>>,
"hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconn
atter. I don’t know how much of an issue this is for more
recent HCP Pipeline versions though.
Peace,
Matt.
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Wednesday, May 6, 2015 at 11:53 AM
To: "hcp-users@humanconnectome.org
<mailto:hcp-users@humanconnec
1/32/11597.short) for the
validation of various MR contrasts vs histological myelin stains.
Also there’s more discussion of this in Glasser at al 2013
Neuroimage, Trends and Properties of Cortex
(http://www.sciencedirect.com/science/article/pii/S1053811913003108).
Peace,
Matt.
From: Barbara
optional (but recommended).
Peace,
Matt.
From: Barbara Kreilkamp <mailto:bakk@googlemail.com>>
Date: Friday, February 20, 2015 at 7:04 AM
To: "hcp-users@humanconnectome.org
<mailto:hcp-users@humanconnectome.org>" <mailto:hcp-users@humanconnectome.org>>
Subject
; Date: Friday, February 20, 2015 at 7:48 AM
>
> To: Matt Glasser
> Cc: Barbara Kreilkamp , "
> hcp-users@humanconnectome.org"
> Subject: Re: [HCP-Users] Myelin Mapping
>
> after the talk?
>
> On 20 February 2015 at 13:42, Glasser, Matthew
> wrote:
>
&g
Dear HCP- users,
Could you please point me to a tutorial for myelin mapping with Human
Connectome Workbench software?
Also, is there a way to implement bias-correction for this technique?
Thank you very much,
Best wishes,
Barbara
___
HCP-Users mailing l
Dear HCP- users,
Could you please point me to a tutorial for myelin mapping with Human
Connectome Workbench software?
Also, is there a way to implement bias-correction for this technique?
Thank you very much,
Best wishes,
Barbara
___
HCP-Users mailing l
23 matches
Mail list logo
