Re: [HCP-Users] Recon-all Errors in Freesurfer HCP pipeline

2018-07-17 Thread Boukhdhir Amal
Thanks Tim, That was so detailed and helpful, so appreciated ! However, other libraries are still missing: libhdf5_hl.so.6 and libhdf5.so.6. I have tried to link these libraries to existing ones (after copying) as suggested in here: 

Re: [HCP-Users] Recon-all Errors in Freesurfer HCP pipeline

2018-07-13 Thread Timothy B. Brown
Hello Amal, The error that is /likely/ to be causing the problem you are having is reported very early in the screen shot you sent. Notice that about 10 lines from the top of the screen shot there is a line that reads: mris_make_surfaces: error while loading shared libraries:

Re: [HCP-Users] Recon-all ERRORS in Freesurfer HCP Pipeline

2018-07-13 Thread Glasser, Matthew
r Amal mailto:boukhdhira...@yahoo.fr>> Reply-To: Boukhdhir Amal mailto:boukhdhira...@yahoo.fr>> Date: Friday, July 13, 2018 at 10:24 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Rec