Re: [hwloc-devel] Using hwloc to detect Hard Disks

2014-09-23 Thread Christopher Samuel
the best, Chris -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.org.au/ http://twitter.com/vlsci

Re: [hwloc-devel] Using hwloc to detect Hard Disks

2014-09-23 Thread Christopher Samuel
I was wondering if this was referring to FC HBA's, where MAC would be the WWN for the device? cheers, Chris -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.org.au/ http://twitter.com/vlsci

Re: [hwloc-devel] Using hwloc to detect Hard Disks

2014-09-23 Thread Christopher Samuel
his: 3405 open("/dev/mem", O_RDONLY)= -1 EACCES (Permission denied) FWIW dmidecode does the same. samuel@haswell:~$ dmidecode # dmidecode 2.12 /dev/mem: Permission denied All the best, Chris -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Science

Re: [hwloc-devel] GIT: hwloc branch master updated. 0e6fe307c10d47efee3fb95c50aee9c0f01bc8ec

2014-03-30 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 30/03/14 02:04, Ralph Castain wrote: > turns out that some linux distro's automatically set LS_COLORS in > your environment when running old versions of csh/tcsh via their > default dot files For example RHEL6 does this.. - --

Re: [hwloc-devel] lstopo - please add the information about the kernel to the graphical output

2013-09-02 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 03/09/13 02:03, Jiri Hladky wrote: > I vote for --append-legend I like that too, though the idea of an additional undocumented --jirka option also appeals. :-) - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian L

Re: [hwloc-devel] lstopo - please add the information about the kernel to the graphical output

2013-08-29 Thread Christopher Samuel
p the image. cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.org.au/ http://twitter.com/vlsci -BEGIN PGP SIGNATURE- Version: GnuP

Re: [hwloc-devel] hwloc-distrib - please add the option to distribute the jobs in the reverse direction

2013-08-26 Thread Christopher Samuel
hows the node to which the device using the IRQ reports itself as being attached. This hardware locality information does not include information about any possible driver locality preference." cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r5324 - branches/libpciaccess/doc

2013-02-18 Thread Christopher Samuel
PCI access library development package License : MIT Description : Development package for libpciaccess. If they're not enabled then you won't see it. cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email

Re: [hwloc-devel] libpci: GPL

2013-02-18 Thread Christopher Samuel
L so it's not an issue. It's when you link in stuff that's not GPL compatible (CDDL for instance) that things become ugly. cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.e

Re: [hwloc-devel] libpci: GPL

2013-02-18 Thread Christopher Samuel
at emptor, dates in calendar are closer than they appear, etc, etc, etc... Of course it might be possible to ask the pciutils maintainer to split out libpci from pciutils and LGPL it. Interestingly, Steam for Linux appears to have linked to libpci.. http://steamcommunity.com/app/221410/discussions/1

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r5299 - in branches/bgq: config include/private src

2013-02-11 Thread Christopher Samuel
o that's V1R2M0 with the CNK patched to eFix 3 (we've got 4-6 also installed but they don't affect the CNK from the look of it). cheers! Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sa

[hwloc-devel] hwloc 1.6 rc2 llvm-gcc warning

2012-12-02 Thread Christopher Samuel
Compiling 1.6-rc2 with llvm-gcc under Kubuntu 12.10 gives: hwloc-ps.c: In function ‘main’: hwloc-ps.c:280:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] cheers, Chris -- Christopher SamuelSenior Systems Administrator VLSCI

Re: [hwloc-devel] [hwloc-announce] Hardware locality (hwloc) v1.6rc2 released

2012-11-21 Thread Christopher Samuel
ced our BG/P with BG/Q (hence now having RHEL6.2 PPC64). cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.org.au/ http://twitter.com/vl

Re: [hwloc-devel] Cgroup resource limits

2012-11-05 Thread Christopher Samuel
lves, # and also much harder to maintain. Does anyone know of a good # library for cgroups? So I've pointed them at this thread and strongly encouraged them to get involved. cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computat

Re: [hwloc-devel] Cgroup resource limits

2012-11-05 Thread Christopher Samuel
stem by queuing a short small job and once it's started asking for many more cores or RAM.. :-) > So we need the capability in ORTE to support the non-direct-launch > cases. I'm pretty sure we're agreeing here, just in different ways of expressing ourselves.. :-) cheer

Re: [hwloc-devel] Cgroup resource limits

2012-11-05 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 06/11/12 01:43, Ralph Castain wrote: > On Nov 4, 2012, at 7:28 PM, Christopher Samuel > wrote: > >> I would argue that the resource managers *should* be doing it > > No argument from me - I would love for them to provide m

Re: [hwloc-devel] Cgroup resource limits

2012-11-04 Thread Christopher Samuel
heavily in the profiles, even if all tasks lives in # the root memcg. cheers, Chris - -- Christopher SamuelSenior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.org.au/ http

Re: [hwloc-devel] backends and plugins

2012-08-12 Thread Christopher Samuel
t; when a new "PCI device" is > added by the PCI backend. That could also be useful to some folks for non-PCI devices, say if a CPU gets hotplugged in/out (or more likely added/removed from a cpuset/cgroup you're in). - -- Christopher SamuelSenior Systems Administrat

Re: [hwloc-devel] lstopo-gui

2012-05-25 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 25/05/12 15:23, Brice Goglin wrote: > Packages yes, but do you have *program* names with such suffixes? Sigh, I missed that distinction, apologies! - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Scien

Re: [hwloc-devel] lstopo-gui

2012-05-24 Thread Christopher Samuel
d have missed some): - -nox (16 packages) - -noxpm (7 packages) - -nogtk (2 packages) - -nogui (2 packages) cheers, Chrus - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545

Re: [hwloc-devel] [PATCH] Use plain "inline" in C++

2012-05-09 Thread Christopher Samuel
anual/autoconf-2.67/html_node/C-Compiler.html But not for C++: http://www.gnu.org/savannah-checkouts/gnu/autoconf/manual/autoconf-2.69/html_node/C_002b_002b-Compiler.html So perhaps the fact that they've never needed to implement such a test is in itself a good guide ? cheers, Chris - --

Re: [hwloc-devel] lstopo-nox strikes back

2012-04-26 Thread Christopher Samuel
variant of lstopo and use the alternatives system to select which to use. cheers, Chris -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/

Re: [hwloc-devel] lstopo-nox strikes back

2012-04-26 Thread Christopher Samuel
On 25/04/12 23:44, Jeffrey Squyres wrote: > FWIW: Having lstopo plugins for output would obviate the need for > having two executable names. IIRC that's generally handled via the alternatives system (or diversions if you don't like alternatives) in Debian/Ubuntu. -- Ch

Re: [hwloc-devel] interoperability with X displays

2012-03-29 Thread Christopher Samuel
don't see that reported as a bug in the BTS, so I'd suggest reporting it and seeing what happens. http://bugs.debian.org/cgi-bin/pkgreport.cgi?src=nvidia-settings cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computatio

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-26 Thread Christopher Samuel
attributes. OK, please find attached both lstopo -v (with debug enabled) and also the XML file requested. This is BG/P, not BG/Q of course! cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-25 Thread Christopher Samuel
who knows.. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) Comment

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-25 Thread Christopher Samuel
you can run it on a compute node to see what /proc or /sys look like in each case. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vl

Re: [hwloc-devel] PCI device name question

2012-03-22 Thread Christopher Samuel
ib1" Net L#3 "ib0" OpenFabrics L#4 "mlx4_0" Looks OK to me. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Christopher Samuel
/Q, but BG/P uses code derived from MPICH2 according to: http://wiki.bg.anl-external.org/index.php/Main_Page Our BG/P seems to claim it's from MPICH2 1.1: samuel@tambo:~> mpicc -v mpicc for 1.1 cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Christopher Samuel
this is because the CNK doesn't implement fork() or execve(), they're designed to start your code and just keep running it until it dies. [1] - http://wiki.bg.anl-external.org/index.php/Cnk cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victor

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-20 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 21/03/12 13:37, Daniel Ibanez wrote: > Please let me know if theres a hint of what could be causing it, > where to post, and what info to provide. Are you running Linux or CNK on the compute nodes for this? cheers! Chris - -- Chris

Re: [hwloc-devel] hwloc-1.3.1 assertion failures on Linux/POWER7

2012-02-01 Thread Christopher Samuel
essages > regarding sched_setaffinity() at build time, and the related test > failures w/ SIGSEGV. That fixes up the segmentation faults for me too with 1.4. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@uni

Re: [hwloc-devel] hwloc-1.3.1 assertion failures on Linux/POWER7

2012-02-01 Thread Christopher Samuel
probe > > My vote is for "(b)" Mine too, either that or: d) Exit saying the user has to set it, or use a different compiler. Very well spotted! - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@un

Re: [hwloc-devel] hwloc-1.3.1 assertion failures on Linux/POWER7

2012-02-01 Thread Christopher Samuel
sts broke. :-( cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GN

Re: [hwloc-devel] hwloc-1.3.1 assertion failures on Linux/POWER7

2012-01-31 Thread Christopher Samuel
${dir}$tst FAIL: glibc-sched cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version:

Re: [hwloc-devel] [hwloc-announce] hwloc v1.4rc2 released

2012-01-23 Thread Christopher Samuel
#x27;s a help? Don't want to hold things up unnecessarily. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -

Re: [hwloc-devel] 1.3.1 and 1.4rc1

2011-12-13 Thread Christopher Samuel
x27;t even really need to wait for that - Cell based systems would be an example of something fairly exotic in that form that already exists (even if it is pretty much extinct now). cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences

Re: [hwloc-devel] Something lighter-weight than XML?

2011-09-05 Thread Christopher Samuel
e and talks to an mpirund on the service node which then launches the users code on the compute nodes via the Navigator API. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3

Re: [hwloc-devel] Something lighter-weight than XML?

2011-09-01 Thread Christopher Samuel
-15.25.5 cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux)

Re: [hwloc-devel] Something lighter-weight than XML?

2011-09-01 Thread Christopher Samuel
ead by a human.. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) C

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-07-05 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 04/07/11 19:18, Brice Goglin wrote: > Christopher, it should work starting with trunk r3535. Looks good to me with hwloc-1.3a1r3537. :-) Thanks! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Scien

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-17 Thread Christopher Samuel
domain field... yes and it compiles and builds an lstopo which includes PCI info! cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-17 Thread Christopher Samuel
d) no It compiles OK but lstopo no longer shows PCI info. I've attached the config.log from our CentOS 5.6 machine. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +6

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-16 Thread Christopher Samuel
ey'd consider it a bug ? cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-14 Thread Christopher Samuel
ease of RHEL5 is that ? cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 14/06/11 10:08, Christopher Samuel wrote: > I'll fix that up and send it on again.. Well oddly only one of the 2 locations had been built (the one with the makelog), but just in case I've redone it from scratch - compressed and atta

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
matches > the makelog.txt? I see PCI checks in the configure > stdout, but nothing about that in config.log... Sigh, I think I ended up building in two different locations somehow - as I said, it was late. :-) I'll fix that up and send it on again.. Mea culpa, mea maxima culpa.. :

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 13/06/11 23:11, Jeff Squyres wrote: > Chris -- could you send your config.log? Posted but currently held for moderation due to size.. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computat

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
;s deciding that libpci is ok > in configure if we cannot possibly ever link properly... I suspect that this symbol is getting pulled in only when it is being incorporated into the shared library, or perhaps when pci_lookup_name() is being called ? cheers! Chris - -- Christopher Samuel

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
guess it's the fact that we only have a static library that's causing the linker to pull in all the symbols, whether needed or not. :-( cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.e

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 13/06/11 22:22, Jeff Squyres wrote: > Chris -- does nm on your libpci not show this? Nope, there is no libpci.so* on RHEL5.6, just a libpci.a. (and no, I've no idea why either!) cheers! Chris - -- Christopher Samuel - Senior

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
figure works just fine and does add -lz. Very odd! cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BE

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 12/06/11 15:45, Christopher Samuel wrote: > I *suspect* it's being pulled in by libpci - here: > > $ nm /usr/lib/libpci.a | grep res_query > U __res_query OK, looks like libpci may well be the culprit. Linking with th

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-13 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 12/06/11 11:42, Christopher Samuel wrote: > CCLD lstopo > /tmp/hwloc-1.3a1r3511/src/.libs/libhwloc.so: undefined reference to > `__res_query' For the record this happens with system GCC & GCC 4.4, Intel compilers and PGI

Re: [hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-12 Thread Christopher Samuel
buntu 11.04 too, but it's not ending up in the libhwloc.so on that platform. cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb

[hwloc-devel] hwloc trunk nightly 1.3a1r3511 fails to build on CentOS 5.6 & RHEL 5.6

2011-06-11 Thread Christopher Samuel
e to `__res_query' It needs to link in libresolv.so to get it to compile (verified by doing make V=1 and adding -lresolv to the libtool line). cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unime

Re: [hwloc-devel] [hwloc-announce] Hardware locality (hwloc) v1.2rc1 released

2011-04-06 Thread Christopher Samuel
'const struct cpu_set_t *' but argument is of type 'cpuset_t *' topology-freebsd.c: In function 'hwloc_freebsd_get_thread_cpubind': topology-freebsd.c:150: warning: passing argument 3 of 'pthread_getaffinity_np' from incompatible pointer type /usr/include/pthread.h:453: note: expected

Re: [hwloc-devel] AMD fusion & hwloc

2011-04-06 Thread Christopher Samuel
ss, MCE & Oprofile support was merged in 2.6.36 but support for the 14h and 12h family temperature sensors was only merged in 2.6.38. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.a

Re: [hwloc-devel] upcoming releases

2011-03-30 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 31/03/11 07:13, Brice Goglin wrote: > Comments? Sounds reasonable to me. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55

[hwloc-devel] Fwd: Fw: How to get cache sizes on AIX 6.1 ?

2011-02-17 Thread Christopher Samuel
ibm.com <http://www.ibm.com/systems/power/> - - Forwarded by Peter Zutenis/Australia/IBM on 16/02/2011 16:00 ----- From: Christopher Samuel To: Peter Zutenis/Australia/IBM@IBMAU List-Post: hwloc-devel@lists.open-mpi.org Date: 15/02/2011 14:04 Subject:How to get

Re: [hwloc-devel] get cpu where a process/thread is executing

2011-02-14 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 15/02/11 00:56, Jeff Squyres wrote: > Maybe get_current_cpuset? get_recent_cpuset ? - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computation Initiative Email: sam...@unimelb.edu.au Phone: +61 (

Re: [hwloc-devel] CMake instead of m4

2011-02-13 Thread Christopher Samuel
that uses CMake there's a collective sigh of "oh no, not again".. Think of using autotools as a way of increasing your karma by taking a little bit more pain in return for decreasing a whole lot more sysadmins pain.. ;-) cheers! Chris - -- Christopher Samuel - Senior Systems A

Re: [hwloc-devel] Docs updates

2011-01-11 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello Samuel! On 07/01/11 11:11, Samuel Thibault wrote: > Christopher Samuel, le Fri 07 Jan 2011 01:01:09 +0100, a écrit : > >> # Hwloc provides both functions that set the current memory >> # binding policies (if supported),

Re: [hwloc-devel] Docs updates

2011-01-06 Thread Christopher Samuel
binding policies (if supported), and functions that allocate # memory bound to specific node set. Can I suggest either dropping "both" or instead saying: $ Hwloc provides functions that both set the current memory $ binding policies (if supported) and that allocate memory $ bo

[hwloc-devel] Images from lstopo slightly truncated width wise when in cpuset

2010-12-16 Thread Christopher Samuel
right hand socket is partly truncated. I've attached an OK and a truncated image to this for info generated with v1.1. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)

Re: [hwloc-devel] 1.1rc4 released

2010-12-16 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 16/12/10 18:12, Brice Goglin wrote: > Le 16/12/2010 02:29, Christopher Samuel a écrit : >> make check fails on our CentOS 5.4 box: > > We can safely ignore this failure. Can you change the exit line at the > end of tests/linux/

Re: [hwloc-devel] 1.1rc4 released

2010-12-15 Thread Christopher Samuel
i.org/community/help/ Passes on RHEL5.5/x86-64, SLES10/PPC and Ubuntu 10.10/x86-64. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.a

[hwloc-devel] hwloc 1.1rc4r2838 warnings

2010-11-24 Thread Christopher Samuel
is not defined hwloc-distrib.c:199: warning: comparison between signed and unsigned Any use ? cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://w

Re: [hwloc-devel] hwloc to be included in RHEL 6.1

2010-11-24 Thread Christopher Samuel
ogies - I do mean the labelling - I guess what I was trying to say was that my preference is that the labelling should depict the logical ordering. Caffeine++; /* :-) */ cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 24/11/10 18:08, Brice Goglin wrote: > Another dumb memset failure: swap the 2nd and 3rd arguments, > it works better here. Gr Well spotted! Swapping them now means "make check" passes on SLES10/PPC. cheers, Chris -

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-24 Thread Christopher Samuel
C box I get: max_os_index=32 memsize=4 Both fail. Any use ? cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PG

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 24/11/10 17:47, Christopher Samuel wrote: > I can get the free(fullmask); to not fail if I comment out > the memset() and migrate_pages() calls. If I just comment > out the migrate_pages() then it still fails so there's > someth

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 24/11/10 17:47, Christopher Samuel wrote: > I can get the free(fullmask); to not fail if I comment out > the memset() and migrate_pages() calls. If I just comment > out the migrate_pages() then it still fails so there's > someth

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 07:48, Christopher Samuel wrote: > *** glibc detected *** /tmp/hwloc/hwloc-1.1rc2/tests/.libs/hwloc_bind: > free(): invalid next size (fast): 0x1001c240 *** Went and had a look at the code that was failing. This is the fragemen

Re: [hwloc-devel] Valgrind errors for hwloc_bind in 1.1rc4r2825

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 24/11/10 17:21, Christopher Samuel wrote: > This is valgrind's summary of errors on PPC: I meant to include the link to interpreting Valgrind output: http://www.valgrind.org/docs/manual/quick-start.html#quick-start.interpret More de

[hwloc-devel] Valgrind errors for hwloc_bind in 1.1rc4r2825

2010-11-24 Thread Christopher Samuel
_membind (bind.c:292) ==6259==by 0x10002ECB: testmem (hwloc_bind.c:80) ==6259==by 0x100035B3: testmem2 (hwloc_bind.c:109) ==6259==by 0x100036F3: testmem3 (hwloc_bind.c:124) ==6259==by 0x100039CF: main (hwloc_bind.c:187) Hope this is useful! cheers, Chris - -- Christopher Samuel - Senior

Re: [hwloc-devel] hwloc to be included in RHEL 6.1

2010-11-24 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 23/11/10 19:30, Samuel Thibault wrote: > Christopher Samuel, le Tue 23 Nov 2010 05:28:32 +0100, a écrit : >> On 23/11/10 07:48, Brice Goglin wrote: >> >>> Anyway, FWIW, I think I am in favor of switching to >>&

Re: [hwloc-devel] Next 1.0/1.1 RC's

2010-11-24 Thread Christopher Samuel
5e88 obj = 0x10031180 str = 0x100365c0 "0x00ff" - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-23 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 07:48, Christopher Samuel wrote: > *** glibc detected *** /tmp/hwloc/hwloc-1.1rc2/tests/.libs/hwloc_bind: > free(): invalid next size (fast): 0x1001c240 *** Now this is weird - if I configure it with CFLAGS="-m64 -g" (S

Re: [hwloc-devel] Next 1.0/1.1 RC's

2010-11-23 Thread Christopher Samuel
lso fails, but I'm still wondering if this is a bug in hwloc or in glibc given that it doesn't appear anywhere else and I can't spot anything with valgrind or with dmalloc. :-( Will chat to our IBM techs when I'm back in the office tomorrow. cheers! Chris - -- Christopher

Re: [hwloc-devel] hwloc to be included in RHEL 6.1

2010-11-22 Thread Christopher Samuel
an see, not the random "physical" (BIOS/kernel/cosmic-ray determined) layout. Perhaps we could have it as a compile time default to keep us who want to default to logical ordering happy ? :-) cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life S

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-22 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 15:51, Christopher Samuel wrote: > Sadly I'm getting the same issue with hwloc-1.1rc2r2806, > Valgrind hasn't been of any help either. :-( I should say the problem does not exhibit itself with valgrind. It also does no

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
lp either. :-( I'm in the Qantas lounge for an hour or two with very slow wifi (scored an upgrade on points) and then I'll be offline for quite a while flying and then with jetlag. cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 09:17, Christopher Samuel wrote: > OK, tried that (and did --disable-debug so I could see what > was happening) but I'm still seeing that same failure Here's the gdb backtrace for it: Program received signal SIGABRT, Abo

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
19260 Aborted ${dir}$tst FAIL: hwloc_bind cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
Will build valgrind, see if that can shed any more light. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PG

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
r--p 0001f000 fd:03 175 /lib/ld-2.4.so f800f000-f801 rw-p 0002 fd:03 175 /lib/ld-2.4.so ffe5-ffe63000 rw-p ffe5 00:00 0 ffe63000-ffe64000 rw-p ffe63000 00:00 0 ffe64000-ffe65000 rw-p ffe64000 00:00 0 [stack] /bin/sh: line 1: 453 Aborted ${dir}$tst FAIL: hwloc_b

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
irectory /tmp/hwloc/hwloc-1.1rc2/tests/linux/hwloc-gather-topology.sh: line 54: /tmp/tmp.WPnBao1790/save//proc/stat: No such file or directory Just did a quick make check with the 1.1rc2 vanilla and can confirm those errors don't happen there. cheers! Chris - -- Christopher Samuel - Senior Sys

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
nd GPFS (both of which are available on this PPC64 box) are returning DT_UNKNOWN (0). So the above loop will need to catch that and, if it is DT_UNKNOWN, do a stat or lstat on the entry to find out what it is. :-( cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - V

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 05:45, Christopher Samuel wrote: > I'll try applying the same patch to the x86-64 build and doing > a --enable-debug build there and compare them. Looking at the strace and the source seems to show that both build

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 05:19, Christopher Samuel wrote: > Good catch - it exists but it is empty. Still puzzled about why lstopo works reading this data on an x86-64 laptop but not on the system itself so I did a bit of poking with strace -e openat,facces

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
it should find things in the devicetree, but we don't have a lot of > debug info in there unfortunately. let's look at (1) first Not a problem. cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam.

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/11/10 04:23, Christopher Samuel wrote: > Not a problem, here you go! Ignore that - forgot to removed --dry-run from patch! No coffee yet.. This one is correct. - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian L

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
ou go! cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (GNU/Linux)

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-21 Thread Christopher Samuel
e rest. > Then reconfigure with --enable-debug and send the whole > stdout/stderr of "HWLOC_FSROOT=/tmp/sles10sp1-ppc64 lstopo" OK, here's both a good run and a bad run for you to compare. cheers! Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victori

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-20 Thread Christopher Samuel
out now so no more Internet access until I get to LA tonight, so that will need to wait I'm afraid! :-( > If you can get me access to this machine, it would help a lot too :) I'll see what I can do when I'm back in Melbourne. :-) cheers! Chris - -- Christopher Samuel - Senio

Re: [hwloc-devel] PCI device location in hwloc

2010-11-20 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 19/11/10 17:01, Christopher Samuel wrote: > Just tried this on our BlueGene/P management node Now my brain is working again, attached is the output from this system, with 3 PCI bridges. Ignore the weird ethernet numbering, this is just

Re: [hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-20 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 21/11/10 01:27, Brice Goglin wrote: > Le 20/11/2010 04:16, Christopher Samuel a écrit : > >> I'm getting a failure doing a make check on SLES10 SP1 on >> our BG/P service (management) node: > > Is this the same ma

[hwloc-devel] hwloc 1.1 rc2 make check fails on SLES10SP1 on PPC64

2010-11-19 Thread Christopher Samuel
on Ubuntu 10.04 and RHEL 5.5. cheers, Chris - -- Christopher Samuel - Senior Systems Administrator VLSCI - Victorian Life Sciences Computational Initiative Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545 http://www.vlsci.unimelb.edu.au/ -BEGIN PGP SIGNATURE- Version

Re: [hwloc-devel] PCI device location in hwloc

2010-11-19 Thread Christopher Samuel
ersion-specific-runtime-libs --without-system-libunwind - --with-cpu=default32 --enable-secureplt --with-long-double-128 - --host=powerpc64-suse-linux Thread model: posix gcc version 4.1.2 20070115 (SUSE Linux) Any ideas ? cheers! Chris - -- Christopher Samuel - Senior Systems Administ

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