Re: [Jmol-users] CML + MSFT JVM

2005-02-16 Thread Rzepa, Henry
I have tracked it down to the following. If eg a .mol or .xyz file is loaded, it has no problems on either Mac or Windows. But if a CML file is loaded (as here), on Windows one appears to get the following errors. Is this a SAX parser error? I thought this was built into Jmol (V

Re: [Jmol-users] CML + MSFT JVM

2005-02-16 Thread Miguel
There is no XML parser built into the Java 1.1 libraries. Therefore, in order to support CML on IE Windows you must provide an additional .jar file: gnujaxp.jar Is this on the jmol.sf site? It is certainly part of the full Jmol distribution. Also part of Jmol cvs. You can download it from:

[Jmol-users] archive='JmolApplet.jar,gnujaxp.jar'

2005-02-16 Thread Rzepa, Henry
There is no XML parser built into the Java 1.1 libraries. Therefore, in order to support CML on IE Windows you must provide an additional .jar file: gnujaxp.jar You are writing your own [applet] tags. One of the attributes is archive='JmolApplet.jar' change this to be

Re: [Jmol-users] archive='JmolApplet.jar,gnujaxp.jar'

2005-02-16 Thread Bob Hanson
Rzepa, Henry wrote: Ie the ability to throw up buttons to perform scripts, ie http://www.ch.ic.ac.uk/rzepa/talks/sanibel05/3.html I appreciate the answer probably lies in one of the (hundreds) of postings made to this list. One might be to simply invoke the jmol.ps rather than writing applet

Re: [Jmol-users] applet vs object

2005-02-16 Thread Bob Hanson
We should get the single quotes out of there. Miguel can do that in an instant. As for object Hmm. I suggest that we need Jmol to work, not be exactly W3c spec. The bottom line is how many people complain. If it doesn't work, many (of my students - who actually come to my office!) will

Re: [Jmol-users] CML + MSFT JVM

2005-02-16 Thread Egon Willighagen
On Wednesday 16 February 2005 09:05 pm, Miguel wrote: I have tracked it down to the following. If eg a .mol or .xyz file is loaded, it has no problems on either Mac or Windows. But if a CML file is loaded (as here), on Windows one appears to get the following errors. Is this a

[Jmol-users] gnujaxp.jar issues

2005-02-16 Thread Rzepa, Henry
But except for the missing gnujaxp.jar (which I actually locally added in the Jmol.jar), we also had problems with testing for the availability of JAXP... which is not, but the exception thrown were not catched... InstantiationException and ClassNotFoundException... This is deja vu all over

Re: [Jmol-users] archive='JmolApplet.jar,gnujaxp.jar'

2005-02-16 Thread Miguel
Henry wrote: Really struggling here. me too. Having added gnujaxp.jar (I find it worrysome having to do this to ensure no platform variability) I now find this appears to have destroyed the following functionality applet height=12 archive=JmolApplet.jar,gnujaxp.jar

Re: [Jmol-users] applet vs object

2005-02-16 Thread Miguel
Enshrined deep inside jmol.ps Jmol.js ? is the applet tag, including the immortal attribute applet mayscript='true' / (an attribute which produces formally invalid XHTML, as Tidy keeps informing me every time) In the proposed W3c XHTML 2.0 spec, applet has finally disappeared, and

Re: [Jmol-users] applet vs object

2005-02-16 Thread Miguel
We should get the single quotes out of there. Miguel can do that in an instant. As far as I know, there is no problem with single quotes. XHTML Tidy (?) complains because it does not recognize 'mayscript' as a valid attribute name. Miguel

Re: [Jmol-users] CML + MSFT JVM

2005-02-16 Thread Miguel
Egon wrote: Hens is using CML now for partial charges and bond orders (the latter are not possible in XYZ), and we had a class room with no Sun JVM, so only MSFT JVM... I strongly recommend that Hens see about upgrading the JVMs upgraded. The MSFT JVM is not supported ... they do no

Re: [Jmol-users] gnujaxp.jar issues

2005-02-16 Thread Miguel
But except for the missing gnujaxp.jar (which I actually locally added in the Jmol.jar), we also had problems with testing for the availability of JAXP... which is not, but the exception thrown were not catched... InstantiationException and ClassNotFoundException... This is deja vu all

Re: [Jmol-users] CML + MSFT JVM

2005-02-16 Thread Egon Willighagen
On Thursday 17 February 2005 12:16 am, Miguel wrote: Egon wrote: Hens is using CML now for partial charges and bond orders (the latter are not possible in XYZ), and we had a class room with no Sun JVM, so only MSFT JVM... I strongly recommend that Hens see about upgrading the JVMs

Re: [Jmol-users] gnujaxp.jar issues

2005-02-16 Thread Rzepa, Henry
But I have just had one OS X user report that his system behaves like Windows, ie gnujaxp.jar appears to be missing from his system somehow? That is because he is running Java 1.3 ... a product which is approximately 4 years old. And a version on the Mac which is *not* supported by Jmol.