Jmol prerelease 10.00.41 is now available from
http://www.jmol.org/files
This release includes several fixes made over the past few weeks, including:
* support for 'stereo redGreen' #documentation issue
* support for 'set disablePopupMenu on|off' #documentation issue
* bug fixes for ssbo
> Could someone tell me where I could fine information concerning the
> popup menu linked to the "Jmol" label on bottom right side of the
> jmol applet window.
>
> I'd like to know if it is possible to suppress this menu : it is for
> use on an publicly accessible touch screen, and I'd like to avoi
Dear all,
Could someone tell me where I could fine information concerning the
popup menu linked to the "Jmol" label on bottom right side of the
jmol applet window.
I'd like to know if it is possible to suppress this menu : it is for
use on an publicly accessible touch screen, and I'd like
Date: Wed, 28 Sep 2005 09:35:43 -0500
From: Bob Hanson <[EMAIL PROTECTED]>
To: jmol-users@lists.sourceforge.net
Subject: [Jmol-users] detecting offline activity
Reply-To: jmol-users@lists.sourceforge.net
An interesting question! Right, now that you can have a page local and
still access anything
On Wednesday 28 September 2005 16:53, Rzepa, Henry wrote:
> As I have mentioned in the past, "testimonials" to the use of Jmol
> in eg Journal pages could perhaps be collected by some volunteer on the
> sf pages.I have about 10 examples sprinkled around various journals,
> including my favo
Miguel wrote:
That is no good ... they need to find a better way to serve the URLs
without requiring cookies.
On the other hand, one could imagine the applet reading
content="3;URL=/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/6+2-ene.xyz?sessid=3705">
no, nevermind I'm
>> Oh, I see, it's a redirect from the server after setting a bunch of
>> document cookies to
>>
>> http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/6+
>>2-ene.xyz?sessid=3705
>>
>> Oh, forget that!
>
> That explains the found behaviour... first time fails because cookies ar
Miguel wrote:
I have the following concerns:
I cannot distinguish between 312.3 and 312.3.1 ... so what is the behavio=
r
of 312.3 ?
I don't know.
I think that Safari 2.0 started their internal version number at 400. Are=
there numbers in the 400 series that do not work? If so that complic
On Wednesday 28 September 2005 05:26 pm, Rzepa, Henry wrote:
> >Why not adding them in the Jmol wiki ? Everyone can add its own
> > contribution. For example, on the JmolLiterature page ?
> >http://wiki.jmol.org/JmolLiterature
>
> Good idea! Anyone know if the jmol wiki is linked to an RSS feed?
>De: "Rzepa, Henry" <[EMAIL PROTECTED]>
>>
>>As I have mentioned in the past, "testimonials" to the use of Jmol
>>in eg Journal pages could perhaps be collected by some volunteer on the
>>sf pages.I have about 10 examples sprinkled around various journals,
>>including my favorite, http://
De: "Rzepa, Henry" <[EMAIL PROTECTED]>
>
>As I have mentioned in the past, "testimonials" to the use of Jmol
>in eg Journal pages could perhaps be collected by some volunteer on the
>sf pages.I have about 10 examples sprinkled around various journals,
>including my favorite, http://www
> > Could I ask the list to test the following
>
http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/index.html>
>
>
> I tested on a Linux box with Fedora + on a Windows box with IE.
>
> Both failed on the initial load.
>
> Both worked after hitting 'reload' one time.
>
S
On Wednesday 28 September 2005 04:54 pm, Bob Hanson wrote:
> Oh, I see, it's a redirect from the server after setting a bunch of
> document cookies to
>
> http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/6+
>2-ene.xyz?sessid=3705
>
> Oh, forget that!
That explains the found
>Same here.
>
>BTW, great to see Jmol in action like this! Thanx.
>
>Egon
>
As I have mentioned in the past, "testimonials" to the use of Jmol
in eg Journal pages could perhaps be collected by some volunteer on the
sf pages.I have about 10 examples sprinkled around various journals,
inclu
It's just a file format problem, Henry.
I'm getting this on my Java Console:
openFile(6+2-yne.xyz) 280 ms
SmarterJmolAdapter:The Resolver thinks:null
error opening
http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/6+2-ene.xyz
unrecognized file format
openFile(6+2-ene.xyz
On Wednesday 28 September 2005 04:40 pm, Miguel wrote:
> > Could I ask the list to test the following
> >
> > http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/
> >index.html
> >
> >
> >From a relatively high-bandwidth connection on the east coast of the US
> > ...
>
> I tes
> Could I ask the list to test the following
>
> http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/index.html
>
>From a relatively high-bandwidth connection on the east coast of the US ...
I tested on a Linux box with Fedora + on a Windows box with IE.
Both failed on the
An interesting question! Right, now that you can have a page local and
still access anything online, the question becomes -- how do you know
if you are local! I pulled the plug on my machine to see what would
happen with these script node calls. The answer is: nothing. No error,
no response is
Craig wrote:
> Regarding the message header above, I have a project I'm working on
> that needs to be run both locally and from the WEB.
By running locally I assume that you mean using file://
> I'd like to
> include the ability to load a remote structure, as you suggest, but
> its peripheral to
Could I ask the list to test the following
http://pubs.acs.org/subscribe/journals/chreay/suppinfo/cr030092l/Figure4/index.html
When I tested it locally, molecules ALWAYS appear on the page. When the ACS
mounted it, molecules always appeared when they test it. But when I
and colleagues here
> A further suggestion refers to the rendering of SS bonds. Currently,
> these bonds
> link either sidechain or backbone atoms. A third useful option would be to
> extend the lines to the cartoon ribbon.
> An example, how this could look like, can be found here:
> http://www.imb-jena.de/cgi-bin/htm
First, a big thanks to Bob for his tip on including MessageCallBack.
It's working great.
--
Regarding the message header above, I have a project I'm working on
that needs to be run both locally and from the WEB. I'd like to
include the ability to load a remote structure, as you su
> A further suggestion refers to the rendering of SS bonds.
> Currently, these bonds link either sidechain or backbone
> atoms. A third useful option would be to
> extend the lines to the cartoon ribbon.
> An example, how this could look like, can be found here:
> http://www.imb-jena.de/cgi-bin/htm
> From the user's point of view one of the most serious disadvantages of
> the current Jmol version is the strange internal mechanism for
> protein secondary structure determination.
I agree completely. It is broken.
> One example is the structure 1srb.
No examples are necessary
> RasMol/Chim
From the user's point of view one of the most serious disadvantages of
the current Jmol version is the strange internal mechanism for
protein secondary structure determination.
One example is the structure 1srb.
RasMol/Chime give for all 10 models one helix in the middle of the sequence.
On the
>>Unfortunately, I do not have the exact number ... and the system was
>>subsequently upgraded to 10.4 Tiger with Safari 2.0.1 (after updates)
>
> For what it's worth, I have one machine I have left with 10.3.9 and
> Safari 1.3.1 (v 312.3.1) which renders the applets marked up in an
> object tag, a
> This all derives from my asking Miguel, "What is our target standard for
> Jmol.js?" To which he answered "XHTML 1.0 strict." Probably -- more
> realisticly -- we should say "HTML 4.01 strict."
Consider it said.
Our target for Jmol.js is HTML 4.01 strict.
Miguel
I wrote:
> A couple more points.
1. It seems to me that Safari 1.3 also supports the object tag and
the jmol.js library. Or have I a cache problem?
To which Miguel replied
A relatively late version of Safari 1.3 failed for me using the object ta=
g.
Unfortunately, I do not have the exa
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