[Jmol-users] Intel-based Macs and Shockwave/Java/Rosetta

2007-02-23 Thread Eric Martz
I just became aware of a Jmol issue that occurs only on Intel Macs. Sorry if this is already a known topic on jmol-users. If you want to use Shockwave in Safari or Firefox, you have to enable Rosetta (PPC) mode, because apparently there is no Shockwave for Intel Macs yet. Rosetta mode disables

[Jmol-users] 11.1.14 Jmol query capability

2007-02-23 Thread Bob Hanson
Jmol users -- comments appreciated. Something Miguel and I talked with LONG ago is now possible with Jmol: The ability to "query" Jmol and get simple, direct answers. I actually didn't realize that this is where it was going until I played with it, but I think it's really true. Take a look at #

[Jmol-users] .dx file format for MEP on surfaces

2007-02-23 Thread Frieda Reichsman
Hi Bob, I'd like to color a surface in Jmol by MEP data that were generated using PyMol with a plugin. I just learned that the PyMol plugin generates a data file for the MEP that is in a .dx format. The part of .dx that is used for this purpose is described here: http://apbs.sourceforge.ne

[Jmol-users] jvxl in 11.1.12

2007-02-23 Thread Frieda Reichsman
When I load a surface that I have saved into a jvxl file using the command: isosurface mysurface "abcd.jvxl" or isosurface "abcd.jvxl" or isosurface file "abcd.jvxl" the surface does not appear, and yet jmol reports no errors. The file is in the same directory with the script that is calling