Re: [Jmol-users] mouse synch command

2007-05-23 Thread Bob Hanson
I think all of Jmol is synch on then isn't it? If you rotate any structure, all structures rotate. To do otherwise you have to use Jmol l1.1's rotateSelected command. Do you know where a description of the Chime command is? I can't find it at

Re: [Jmol-users] mouse synch command

2007-05-23 Thread Bob Hanson
Something like: http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/compare.htm but maybe better? I experimented with this a bit but didn't finish the job. This can be done in JavaScript. The way this page is working is: JmolScript set loadStructCallback myfunc JavaScript

Re: [Jmol-users] write commands (history, state)

2007-05-23 Thread Bob Hanson
Frieda Reichsman wrote: 1. write history command - the written history file includes the command to write history with the same file name - this will lead to the file overwriting itself. If you are editing the file and do not realize that, you'll be overwriting the original file you

[Jmol-users] 11.1.43

2007-05-23 Thread Bob Hanson
Nico has just released 11.1.43. This set of bug fixes covers: version=11.1.43 # bug fix for labels mysteriously disappearing. Also probably taking up HUGE amounts of hashtable space. # bug fix for hydrogen bond calculation with incomplete nucleic acid definitions. # bug fix for set picking

Re: [Jmol-users] mouse synch command

2007-05-23 Thread Timothy Driscoll
On May 23, 2007, at 11:47 AM, Bob Hanson wrote: Something like: http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/ compare.htm but maybe better? I experimented with this a bit but didn't finish the job. not sure; that page hangs in Safari when I try to rotate. This can

Re: [Jmol-users] mouse synch command

2007-05-23 Thread Bob Hanson
Timothy Driscoll wrote: On May 23, 2007, at 11:47 AM, Bob Hanson wrote: Something like: http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/ compare.htm but maybe better? I experimented with this a bit but didn't finish the job. not sure; that page hangs in Safari when

Re: [Jmol-users] mouse synch command

2007-05-23 Thread Bob Hanson
Timothy Driscoll wrote: But if you can figure out a scheme that would be reasonable in terms of setting up this function wihtin Jmol -- I would want it to be possible to designate what applets are to be synced, not just all applets on the page -- then I can see if I can implement it. Maybe

[Jmol-users] Convert cartesian to fractional

2007-05-23 Thread Aidan Heerdegen
Bob, I can convert fractional coords to cartesian with a simple a = {1/1 0 0} is there (or could there be) a simple way to do the same in reverse? I wish to obtain the fractional coordinates of my molecule (which I currently do like so {molecule=1}.xyz). Can I get the same information but