[Jmol-users] perspective model default

2007-06-05 Thread Bob Hanson
I'd like input on the following question: Should Jmol 11.2 have as a default perspectiveModel 10 or perspectiveModel 11? (currently the default is perspectiveModel 10 -- same as Jmol 10.2) Please take a look at http://chemapps.stolaf.edu/jmol/docs/examples-11/perspective.htm Consider your

Re: [Jmol-users] perspective model default

2007-06-05 Thread Angel Herraez
From what I've read on this list, I think that perspectiveModel 11 has a better behaviour at high zooms. So, I think it could be made the default. It doesn't affect my pages, since I am not using perspective specifically -other than disabling it for some models-

[Jmol-users] Help with Jmol

2007-06-05 Thread David Kim
Hello, My name is David Kim and I am currently an employee of the National Center for Supercomputing Applications. I am currently working in the Education department and we are trying to incorporate Jmol into one of our workshops. The program is called ICLCS and we are trying to assist teachers

Re: [Jmol-users] questions

2007-06-05 Thread rspinney
Message: 2 Date: Sat, 02 Jun 2007 07:58:37 -0500 From: Bob Hanson [EMAIL PROTECTED] Subject: Re: [Jmol-users] questions To: jmol-users@lists.sourceforge.net Message-ID: [EMAIL PROTECTED] Content-Type: text/plain; charset=ISO-8859-1; format=flowed rspinney wrote: I have a couple of

Re: [Jmol-users] Help with Jmol

2007-06-05 Thread Bob Hanson
David, you might also be interested in a site we developed here at St. Olaf, as it has about 1000 small molecules; http://www.stolaf.edu/depts/chemistry/mo/struc/ with associated model files in http://www.stolaf.edu/depts/chemistry/mo/struc/data/ Bob Hanson David Kim wrote: Hello, My

Re: [Jmol-users] questions

2007-06-05 Thread Bob Hanson
rspinney wrote: I'm not sure we are on the same wavelength. As an example, frame 20 is a key frame where echo and message are changed. If the animation is playing (i.e. using animation direction +1; model resume;) the changes (based on the frame number) are caught by animFrameCallback and passed

Re: [Jmol-users] Help with Jmol

2007-06-05 Thread Paul Pillot
For small molecules, you can use this website : http://davapc1.bioch.dundee.ac.uk/programs/prodrg/ It allows to design small molecules through the JRE applet and calculates a minimized energy model. Other websites such as Klotho or Drugbank are great for organic molecules. Paul David Kim a