On Tue, Apr 8, 2008 at 7:02 AM, Eric Martz <[EMAIL PROTECTED]> wrote:
> Rolf, I think you are right: this is a problem that started with Java
> version 1.6.0_03. Users of Firefox that have Java version 1.6.0_03
> or newer (the newest stable release is 1.6.0_05) will encounter a
> Access Contro
Thank you for all of the feedback! As Eric mentioned, we cannot
reproduce the problem from within the Weizmann Institute so your
feedback has been invaluable (and simultaneously alarming).
Rolf, I think you are right: this is a problem that started with Java
version 1.6.0_03. Users of Firefox
Hello Jan,
chime associated pdb mime types with IE, thus by clicking on a link
pointing to a pdb file you could launch directly IE.
As far as I know this is not the case with jmol. But you can achieve
similar effect by embedding a web page including the jmol applet
directly into your powepoi
On my linux box (RHEL, WS 4) running Firefox 2.0.0.4/Java 1.6.0_01 (yes,
old) all of the green links work just fine
Also, 1) the front page is 1EVE with the correct view.
2) I avoid Windows when I can.
3A) all the green links work on randomly loaded structure pages
BTW, the site is spec
> Message: 1
> Date: Mon, 07 Apr 2008 08:56:05 -0400
> From: Eric Martz <[EMAIL PROTECTED]>
> Subject: [Jmol-users] Proteopedia: green links problem in Firefox
> To: jmol-users@lists.sourceforge.net
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="us-ascii"; format=flowed
>
>
Could I ask, as a newly joined user, this forum for an advice.
Having used Chime for 7 years, I learned that it will soon not be
supported anymore, and that I should use the JMOL in Java. This works
great in website that use it.
I have hundreds of pdb and mol files on my laptop, which I use in
te
> I was wondering if there are combinations of commands
> that would follow rotateSelect and would allow the equivalent of
> spinSelect or moveSelect. I'd like to carry out a continuous rotation
> over a few seconds on one file (while keeping the other fixed) instead
> of a visually instantaneous r
Eric and All,
The green links are still not working on my office computer. The
structure on the main page is shown as ribbon, colored by group (N->C
rainbow), with a magenta spacefilled ligand. On the random page the green
ligand links do not work. The java version is 1.6.0_05.
The green link
On Mon, Apr 7, 2008 at 2:56 PM, Eric Martz <[EMAIL PROTECTED]> wrote:
> We're not sure what to suggest for linux users -- Egon?
On my Ubuntu Hardy 8.04 system, this works for the green links:
Opera 9.27 + Sun Java 1.6.0.05
Konqueror 3.5.9 + Sun Java 1.6.0.05
I have had no success with Konqueror
Thanks Angel and Xavier for your help on my question of rotating one
file while keeping another fixed.
I have one quick last question. The description for the rotateSelect
command states:
"In addition, if the keyword SPIN is used, the command starts only the
atoms spinning." I was wondering if
Eric Martz wrote:
> 1. Please tell us: When you go to the main page of Proteopedia, before you
> click a green link, does a molecule display in Jmol? If yes, do you see the
> SCRIPTED view intended, which is a ribbon, colored by group (N->C rainbow),
> with a magenta spacefilled ligand?
>
Yes
> 1. Please tell us: When you go to the main page of Proteopedia,
> before you click a green link, does a molecule display in Jmol? If
> yes, do you see the SCRIPTED view intended, which is a ribbon,
> colored by group (N->C rainbow), with a magenta spacefilled ligand?
Yes and yes
>
> 2. Do
Green links work fine on Safari 3.1 and Firefox 2 on Mac OS X 10.4.11
and 10.5.2 for 1eve.
David
___
Dr. David P.Leader, Biochemistry and Molecular Biology, FBLS,
Davidson Building, University of Glasgow, Glasgow G12 8QQ, UK
Phone: +44 41 330-59
Regarding green links failing in Proteopedia.Org:
Four people have kindly reported that green links do not change the
Jmol scene, in Firefox. We greatly appreciate these reports.
We have made one change that might solve the problem. Please try again now.
Unfortunately, we cannot reproduce the o
Egon Willighagen wrote:
> On Mon, Apr 7, 2008 at 10:08 AM, Eric Martz <[EMAIL PROTECTED]> wrote:
>> Please tell us exactly what you mean by "does not work for me".
>
> Clicking a green link does not have any effect on the applet. The Jmol
> Console shows me output like:
>
> script 6 started
> ja
Problems here too:
http://proteopedia.org/wiki/index.php/1eve
WinXP Firefox 2.0 latest
Clicked on "unique orientation" green link, got this in Jmol console:
script 4 started
java.security.AccessControlException: access denied
(java.net.SocketPermission 132.77.150.58:80 connect,resolve)
line
On Mon, Apr 7, 2008 at 10:08 AM, Eric Martz <[EMAIL PROTECTED]> wrote:
> Please tell us exactly what you mean by "does not work for me".
Clicking a green link does not have any effect on the applet. The Jmol
Console shows me output like:
script 6 started
java.security.AccessControlException: acc
Eric,
Looks like a great wiki but the green links do not work for me either
(Firefox 2.0.0.13, Windows XP 2002 SP2).
FileManager opening
http://proteopedia.org/wiki/scripts/Hemoglobin/Oxysubunitsf/4.spt
script ERROR: java.security.AccessControlException: access denied
(java.net.SocketPermissio
On April 6, Egon Willighagen wrote:
>For long I wished to see [EMAIL PROTECTED] with custom views on thing.
>Exactly like the way this is done. I really like the idea of those
>green links! Brilliant!
>Does not work for me, but the idea is brilliant :)
Dear Egon,
Please tell us exactly what
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