Re: [Jmol-users] beyond a limitation of JMOL: TiBS article on publication-integrated 3D models in PDFs

2008-09-05 Thread Angel Herraez
Amazing! Thanks for pointing this out, Wayne. I have missed the last two email ToC for TIBS, which I regularly review. Movement of the model is very smooth. The quality of the renderings is not so good -- must be related to file size, since PyMol can have a very good quality. El 5 Sep 2008 a

Re: [Jmol-users] beyond a limitation of JMOL: TiBS article on publication-integrated 3D models in PDFs

2008-09-05 Thread Rzepa, Henry
>Amazing! >Thanks for pointing this out, Wayne. I have missed the last two email >ToC for TIBS, which I regularly review. > >Movement of the model is very smooth. The quality of the renderings >is not so good -- must be related to file size, since PyMol can have >a very good quality. > I too am im

Re: [Jmol-users] beyond a limitation of JMOL: TiBS article on publication-integrated 3D models in PDFs

2008-09-05 Thread Angel Herraez
just a record for the future... > fascinating. So one would simply need to write a U3D file format > exporter. Very good project for someone. http://sourceforge.net/projects/u3d Universal 3D Sample Software Set of libraries to write, read, extend, render and interact with U3D- formatted data, a

[Jmol-users] background color and jmolGetPropertyAsString("image");

2008-09-05 Thread Steven R. Spilatro
Hi all, I would like to have the applet background automatically changed to white when a user snaps an image, and I have been toying around with the following code: function snapJmolImage (){ jmolScript("color background white"); var myImage = jmolGetPropertyAsString("image"); document.getEleme

Re: [Jmol-users] background color and jmolGetPropertyAsString("image");

2008-09-05 Thread Robert Hanson
Note that MSIE (6 at least) does not support http://en.wikipedia.org/wiki/Data:_URI_scheme Use jmolScriptWait("color background white"); here and you should be OK. The problem is that jmolScript() works "asynchronously" -- you are passing the command to Jmol and saying, "Do this at the next

[Jmol-users] Problems with echo images & image buttons

2008-09-05 Thread Eric Martz
Hi, Bob, This does not have to work in 11.6 (final release). On April 13, 2007, you announced that echos can be made into buttons that, when clicked, execute a specified script, giving this example: http://chemapps.stolaf.edu/jmol/docs/examples-11/buttons.htm This works fine for me. I can use th

Re: [Jmol-users] Problems with echo images & image buttons

2008-09-05 Thread Robert Hanson
definitely needs fixing. (1) antialiasdisplay is doubling the image size. (2) vertical centering is not quite right, I think. Bob On Fri, Sep 5, 2008 at 4:25 PM, Eric Martz <[EMAIL PROTECTED]>wrote: > Hi, Bob, > > This does not have to work in 11.6 (final release). > > On April 13, 2007, you an

[Jmol-users] javascript command fails in Safari?

2008-09-05 Thread Eric Martz
It appears to me that the javascript command of Jmol does not work in Safari on Mac OS X. Examples, typed into the Jmol console: javascript alert("hi") or javascript alert(document.location.href) These display the alert in Firefox on Windows or Mac OS X, but not in Safari on Mac OS X. If this

Re: [Jmol-users] javascript command fails in Safari?

2008-09-05 Thread Jeff Hansen
I don't know about from the console, but I've used it successfully in a web page on Safari. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED]

Re: [Jmol-users] javascript command fails in Safari?

2008-09-05 Thread Dean Johnston
I can't reproduce this - the javascript command works just fine from the Jmol console for me on both Firefox and Safari for OS X. Dean On Fri, Sep 5, 2008 at 6:18 PM, Eric Martz <[EMAIL PROTECTED]>wrote: > It appears to me that the javascript command of Jmol does not work in > Safari on Mac OS X