Re: [Jmol-users] Jmol mediawiki extension

Something's not right. mayscript = false in no way prevents jmolButton from being created, and with mayscript=false, the jmolButton still works fine. Something else is going on there. Bob On Wed, Dec 10, 2008 at 3:14 PM, Angel Herráez <[EMAIL PROTECTED]> wrote: > On 10 Dec 2008 at 7:36, Robe

Re: [Jmol-users] Jmol mediawiki extension

On 10 Dec 2008 at 7:36, Robert Hanson wrote: > But, really, it's simpler than that if you want to disallow all > callbacks and every last bit of JavaScript capability of the applet -- > > just don't have "mayscript" in the applet tag. Ah, interesting. But then jmolButton() et al. do nothing. I

Re: [Jmol-users] Support of 'alchemy' format for rectangular schematic base-pair geometry

right -- sorry -- >> See http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm and >> http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip I've put up that roll-bend example instead of the other one. By the way, one could do a whole lot with quaternions in this area. Let me know if y

Re: [Jmol-users] Support of 'alchemy' format for rectangular schematic base-pair geometry

Dear Prof. Hanson, Thanks for your quick effort in implementing Jmol support for the alchemy format. Date: Tue, 9 Dec 2008 23:52:45 -0600 > From: "Robert Hanson" <[EMAIL PROTECTED]> > Subject: Re: [Jmol-users] Support of 'alchemy' format for rectangular >schematic base-pair geometry > To:

Re: [Jmol-users] Jmol mediawiki extension

It is true for all browsers because Jmol checks the tag itself and explicitly denies itself access On Dec 10, 2008, at 7:53 AM, "Angel Herraez" <[EMAIL PROTECTED]> wrote: >> All -- I'm pretty sure that if you invoke _jmol.noEval = true in your >> wiki code, you will completely shut down any

Re: [Jmol-users] Jmol mediawiki extension

> All -- I'm pretty sure that if you invoke _jmol.noEval = true in your > wiki code, you will completely shut down any JavaScript functionality > of Jmol except callbacks. This setting cannot be changed within Jmol > -- it is checked upon applet creation and cannot be changed within the > applet. S

Re: [Jmol-users] Jmol mediawiki extension

All -- I'm pretty sure that if you invoke _jmol.noEval = true in your wiki code, you will completely shut down any JavaScript functionality of Jmol except callbacks. This setting cannot be changed within Jmol -- it is checked upon applet creation and cannot be changed within the applet. So it does

Re: [Jmol-users] Select relative residue numbers in a chain

A general solution to such inquiries is found in Jmol 11.6. Jmol now allows an extended version of the select command specifically for this sort of complex selection. The syntax is: select {someOverallAtomExpression} (some math expression using variable _x) "_x" here represents "each atom of the

Re: [Jmol-users] Select relative residue numbers in a chain

Hello Umanga Jmol will always use the residue numbers that are written in the pdb file (not the order in the chain or in the file). So, your problem seems to be in the exact data you have in your pdb file. That said, there may be a way for Jmol to find out the length of chain A and add it to t

[Jmol-users] Select relative residue numbers in a chain

Greetings all, I want to select the CDR3 region.The CDR3 region is calculated and stored excel file as follows: PDBID | CHAIN | Length | Sequence | CDR3 1uj3 A 215DI 98 lqhgespyt 97 1uj3 B 217Q