Re: [Jmol-users] good idea?

2009-02-05 Thread Egon Willighagen
On Fri, Feb 6, 2009 at 7:08 AM, Robert Hanson wrote: > What do you think? Interesting... maybe not so intuitive, but it is interesting... how does it relate to other key strokes, or does Jmol not make use of that? shortcuts... +/- for zoom, I don't know... > Any reason this should not be the def

[Jmol-users] good idea?

2009-02-05 Thread Robert Hanson
I'm trying out a new idea with the latest incarnation of Jmol, at http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm click on the applet and then carefully type: background white [enter] or set showKeyStrokes then type into the applet What do you think? Any reason this should not be the

Re: [Jmol-users] problems reading mopac UHF

2009-02-05 Thread Robert Hanson
Yes, in fact this is fixed. It was a very simple bug. See http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip On Thu, Feb 5, 2009 at 6:25 PM, fab wrote: > Dear Robert, > > any news about the UHF non readable file? > > thanks > fab > > > Robert Hanson ha scritto: > > yeah, that's for

Re: [Jmol-users] problems reading mopac UHF

2009-02-05 Thread fab
Dear Robert, any news about the UHF non readable file? thanks fab Robert Hanson ha scritto: yeah, that's for me. I can help. Please send a copy of the file to me. On Wed, Feb 4, 2009 at 11:03 AM, fab > wrote: hi, I am using Jmol to visualize the results of

Re: [Jmol-users] cystine selection set

2009-02-05 Thread Robert Hanson
select within(group, sulfur and connected(sulfur)) On Thu, Feb 5, 2009 at 2:44 PM, Paul Pillot wrote: > Dear Jmolers, > I've just used an old chime script involving the "cystine" expression > to select the cysteins associated in a ssbond and realised it does > not select anything in Jmol (11.6)

[Jmol-users] cystine selection set

2009-02-05 Thread Paul Pillot
Dear Jmolers, I've just used an old chime script involving the "cystine" expression to select the cysteins associated in a ssbond and realised it does not select anything in Jmol (11.6). My questions are : is there a simple workaround ? Should it be implemented in Jmol ? cheers, Paul ---

Re: [Jmol-users] Problem with local installation

2009-02-05 Thread Angel Herraez
Hello Norman That's quite unexpected. The Java installation should take care of everything. I have never seen such problem. Some things to try, as non-privileged user: * Can you see Jmol applets in web pages? * Can you open another Java application (another .jar file)? * Is this happening only w

[Jmol-users] Problem with local installation

2009-02-05 Thread Norbert Walther
Hi folks, I really like working with Jmol, so I installed it on my WinXP notebook. Everything works fine as long as I work as Administrator. When I try to open a file as a normal user with restricted permissions, Java.exe crashes. I am afraid I cannot localize the problem. Is anyone out there w

Re: [Jmol-users] Sage and JVXL

2009-02-05 Thread jason-sage
(Apparently my reply from a few days ago didn't get to the list for some reason, so I'm sending it again.) Robert Hanson wrote: > Jason, > > ho, ho! Now there's a challenge... > Yeah, I figured it wouldn't be exactly trivial, but in reality, you guys have already done all the hard work :).