[Jmol-users] Jmol JAVA cache problem

Hi, Jmol has a display issue because of Java cache http://wiki.jmol.org/index.php?title=Troubleshooting/Java_Problems I was wondering there is an automatic way to do that? That is, users do not need to clear java cache manually. Thanks. Bin __

Re: [Jmol-users] Java security warnings

The most troubling thing I find about the new Java security warnings is that somehow if I get an error in the applet, I need to reboot to use the applet again. It doesn't seem like shutting down Firefox completely is enough to reset whatever is going wrong (which may simple be me dismissing a wi

Re: [Jmol-users] Java security warnings

Mmmm... guess what My computer at home had 6u15 and gave no errors. I've just updated to 6u20 and still no problem. I will further investigate this issue tomorrow when I'm in the office again. Sorry for having disturbed you all. This evening I had the same problem in at least 3 sites with apple

Re: [Jmol-users] Java security warnings

Hi Angel, I have upgraded to Java 6u20 and I am not seeing the problem with www.jmol.org. Can you configure Java for more debugging in the Java control panel (as explained here) and

Re: [Jmol-users] Java security warnings

Yes, but the warning Angel is seeing is about mixed code (partly signed / partly unsigned). This shouldn't be the case : - The unsigned applet should contain no signed code : no warning at all - The signed applet should contain only signed code : the user will be asked to authorize it (a

Re: [Jmol-users] Java security warnings

Should be in the Java distribution (at least in the JDK, not sure for the JRE) Nico 2010/4/19 Angel Herráez > El 19 Apr 2010 a las 17:20, Nicolas Vervelle escribió: > > > Can you still check the status of each jar of Jmol distribution you > > are using with jarsigner ? > > I'll try to do that >

Re: [Jmol-users] Java security warnings

I've just had the same warning in two non-Jmol pages. It's the same warning dialog shown at http://java.sun.com/javase/6/docs/technotes/guides/jweb/mixed_code.htm l Definitely a Java update issue. java.vendor:Sun Microsystems Inc. java.version:1.6.0_20-b02 os.name:Windows XP Same in all my browser

Re: [Jmol-users] Jmol -- two major advances

wow! On Mon, Apr 19, 2010 at 10:07 AM, Rolf Huehne wrote: > On 04/09/2010 07:22 PM, Robert Hanson wrote: > > We could try that. > > > > set repaintWaitMs 1000 > > > > 12.0.RC4 > > > I havn't tried it with PDB entry 1M4X yet, but I have tried it with > entry 2NOX to solve the similar problem discu

Re: [Jmol-users] Java security warnings

The signed applet SHOULD be a concern to anyone opening the page. Once you OK it, it should be good for some time (ever?). But there is definitely NO signed code in the unsigned Jmol applet. Hmm 2010/4/19 Angel Herráez > Today I am seeing Java warnings regarding security when I open any of >

Re: [Jmol-users] Java security warnings

El 19 Apr 2010 a las 17:20, Nicolas Vervelle escribió: > Can you still check the status of each jar of Jmol distribution you > are using with jarsigner ? I'll try to do that Where do I get jarsigner? -- Download Intel

Re: [Jmol-users] Java security warnings

On 04/19/2010 04:38 PM, Angel Herráez wrote: > Today I am seeing Java warnings regarding security when I open any of > my pages with Jmol applets, both local and from web server. > That's Java 1.6.0_20 in WinXP (I may have updated Java recently, but > I don't remember for sure when) > > The warn

Re: [Jmol-users] Java security warnings

This is probably due to a security change in Java 6 Update 19, see here . Apparently, it detects some signed code somewhere. If we can find where it is, we can change the build process to clearly have only signed (or non-signe

Re: [Jmol-users] Java security warnings

Thanks, Nico No, my pages use the unsigned applet with Jmol.js. This problme wasn't there before, they are old pages. The applet version is different in different pages: 10.00.58 11.0.3 11.4.RC6 11.9.29 All give the same message, so it's not Jmol version.

Re: [Jmol-users] Jmol -- two major advances

On 04/09/2010 07:22 PM, Robert Hanson wrote: > We could try that. > > set repaintWaitMs 1000 > > 12.0.RC4 > I havn't tried it with PDB entry 1M4X yet, but I have tried it with entry 2NOX to solve the similar problem discussed in jmol-Bugs-2971384 ("Large image export problem - 11.8.20/11.9.24")

Re: [Jmol-users] Java security warnings

Hi Angel, What is the version of Jmol applet ? Can you check that every .jar that you have put in the directory is signed ? (the message says that some are not signed) You can use jarsignerwith the -verify option. Nico 2010/4/19 An

[Jmol-users] Java security warnings

Today I am seeing Java warnings regarding security when I open any of my pages with Jmol applets, both local and from web server. That's Java 1.6.0_20 in WinXP (I may have updated Java recently, but I don't remember for sure when) The warning says something along the lines of "Java has detected

[Jmol-users] alpha transparency not working

Not sure if it is a general issue but alpha transparency doesn't appear to be working on 11.8.22. I'm using Pov-ray 3.6.2 on Windows 7 64-bit. -- Prof. Sérgio Ceroni da Silva Laboratório de Biologia Molecular Aplicada - LBMA Faculdade de Veterinária - Universidade Federal do Rio Grande do Sul Av