[Jmol-users] Spartan Partial Charges

2010-09-04 Thread Otis Rothenberger
Bob, I figured out how to pass the set of partial charges to a model, but this called my attention to another point. When Jmol reads the partial charges from a .spartan file, it looks like it picks up the Mulliken charges. The ESP charges are in the .spartan file. I want to use the ESP charg

Re: [Jmol-users] camera dependent slab setting

2010-09-04 Thread Robert Hanson
OK, it's set slabRange 5.0 -- As long as slabRange > 1, Jmol will use it instead of the slab setting. -- Setting slab the usual way automatically sets slabRange to 0, turning it off -- Still requires slab ON It's a little odd but it might be interesting. http://chemapps.stolaf.edu/jmol/docs

Re: [Jmol-users] True Jmol Depict Jmol to JME

2010-09-04 Thread Otis Rothenberger
Bob, The image file (gif) loads directly to any page using an image tag with the Resolver's url as the image src. Although it's dynamically generated from the query string, ii's simply a gif image. Anyone can load it. No problem. With the JME file, I'm still on an embedded JME Editor train

Re: [Jmol-users] reset newly stops spinning

2010-09-04 Thread Robert Hanson
sure, what the heck. reset SPIN does what 11.8 did for reset - resets orientation, including spin Bob On Sat, Sep 4, 2010 at 4:20 PM, Eric Martz wrote: > In 11.6, reset did not stop spinning. In 12.0.11 it does. > > I often want to reset the orientation and zoom, e.g. as part of > playing back

Re: [Jmol-users] True Jmol Depict Jmol to JME

2010-09-04 Thread Robert Hanson
On Fri, Sep 3, 2010 at 3:02 PM, Otis Rothenberger wrote: > This is an outgrowth of the gif image note, but its a new subject. So new > chain... > > Here's a true Jmol depict - i.e. Jmol model kit mode 3D --> JME stereo 2D > > http://chemagic.com/web_molecules/script_page_large.aspx > > Click The

[Jmol-users] reset newly stops spinning

2010-09-04 Thread Eric Martz
In 11.6, reset did not stop spinning. In 12.0.11 it does. I often want to reset the orientation and zoom, e.g. as part of playing back the "show orientation" report. My present scripts, javascript, etc. e.g. in the Jmol Tutorial Authoring Template assume that reset does not alter the spinning s

Re: [Jmol-users] camera dependent slab setting

2010-09-04 Thread Alexander Rose
Hi, Am 03.09.2010 um 18:49 schrieb Robert Hanson: > So I think we could set some slab option to be dependent upon zoom. For > example: > > slab 5.0 > > a decimal here would indicate that at whatever zoom level you are at, the > slab would be set to be wherever the visual range is 5.0 Angstrom