Bob + other Lords of Jmol—I'm looking for some clarification of the "plot
ramachandran r" specification from the Interactive Script Docs; particularly
the definition of theta. It makes sense to me that theta is approximately
the sum of delta phi and delta psi. I get lost with two points:
- How
It was a bug in Jmol that I introduced when I added that thin scrolling
panel on the far right. Turns out that Safari or maybe the Mac OS itself
doesn't give the same sort of "mouse move" signals that a PC does. So even
though the mouse was moved outside the scrolling region, it wasn't turning
that
Yep. That fixed it. Was it a page problem or an applet problem?
On Sep 20, 2010, at 7:21 PM, Robert Hanson wrote:
> Well, let's encourage people to add to that now.
>
>
> ps: Mac problem solved. See that page now after closing and reopening your
> browser, Phil.
>
> 2010/9/20 Angel Her
The mouse problem should be fixed now. You can find a working version at
http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol.zip
Bob
On Thu, Sep 9, 2010 at 1:05 PM, Eric Martz wrote:
> Hello, I reported a similar problem on Aug 25 in the thread "Mouse
> zooms, should rotate, SAFARI ONLY". The
Well, let's encourage people to add to that now.
ps: Mac problem solved. See that page now after closing and reopening your
browser, Phil.
2010/9/20 Angel Herráez
> Back to the original thread purpose...
>
> The section is up in the wiki
> http://wiki.jmol.org/index.php/Jmol_in_the_Classroom
>
Back to the original thread purpose...
The section is up in the wiki
http://wiki.jmol.org/index.php/Jmol_in_the_Classroom
Feel free to add your bits
--
Start uncovering the many advantages of virtual appliances
and st
Ok, hijack my thread. See if I care !!! :)
Phil, just for you, I'll reboot my Mac in Mac mode and see what the heck you
guys are talking about.
Bob
On Mon, Sep 20, 2010 at 11:51 AM, Philip Bays wrote:
> Bob:
>
> I like this a lot!!
>
> However --- (there is always a however, isn't there.)
Wow, I had no idea Jmol could generate Ramachandran plots on the fly!
Remarkable!
On Mon, Sep 20, 2010 at 1:19 PM, Jeff Hansen wrote:
> I just checked this out. I sporadically observed this behavior of zooming
> instead of rotating. It didn't always happen even after loading several
> structur
I just checked this out. I sporadically observed this behavior of zooming
instead of rotating. It didn't always happen even after loading several
structures. It would happen once or twice then not happen. It was rather
random in my case. Each time it happened, a couple of taps on my trackpa
Bob:
I like this a lot!!
However --- (there is always a however, isn't there.) On a Mac, using Safari,
I observe something that I think was discussed earlier but I do not remember if
there was a resolution.
The first two or three structures I request work fine. However, at some point,
the r
What do you think of starting a Wiki page "Jmol in the Classroom" -- or
perhaps, to be consistent, "Classrooms Using Jmol"
People could enter "teachable moments" when they used Jmol in an effective
way during class.
Here's a possible first installment:
Today, Day 5 of first-semester organic chem
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