Hello,
Does anybody know how to export to vrml? Several times in Jmol wiki it
is stated that it is possible to export to vrml both from menu and
script. I spent lot of time searching documentation and web to find out
how, but I haven't succeeded.
The export menu doesn't give any option to expor
I'm trying to make a figure showing the coordination of metal ions in crystal -
they form network of tetrahedra. I can do this with bonds, but the
figure looks confusing. It would be much more clear with opaque tetrahedrons.
As I understand Jmol builds polyhedra around some central atoms, which
WRITE xxx.wrl
On Fri, Sep 7, 2012 at 7:50 AM, Jiri Vohradsky wrote:
> Hello,
>
> Does anybody know how to export to vrml? Several times in Jmol wiki it
> is stated that it is possible to export to vrml both from menu and
> script. I spent lot of time searching documentation and web to find out
Hi Jiri!
Also available from the pop-up menu:
File > Export VRML
so you can choose the destination folder as well as filename, visually
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Thanks to those who reported their findings. From those results I
noticed that (for reasons I don't know) my brand new Snow Leopard was
running Safari 5.0.5, while those of you reporting that Jmol works in
Snow Leopard Safari had Safari 5.1.7.
Before I got around to installing Safari 5.1.7 by h
Nikolay, maybe you can add a dummy atom at the center, produce the
tetrahedron and then hide the atom.
Not very clean, but probably effective
I cannot advise however about generating the tetrahedron around the fake
atom
-
The polyhedron needs a central atom. But you can add that yourself. The
command appears to be undocumented --
assign {attachmentAtom} "Symbol" {x y z}
For example:
assign atom {atomno=14} "Cl" {2 3 4}
That position {2 3 4} could also be an average position of a number of
atoms:
assign atom {at
On 9/7/2012 1:03 PM, Robert Hanson wrote:
The polyhedron needs a central atom. But you can add that yourself.
The command appears to be undocumented --
assign {attachmentAtom} "Symbol" {x y z}
For example:
assign atom {atomno=14} "Cl" {2 3 4}
That position {2 3 4} could also be an average po
OK, here's how it works. This is probably not documented, but it is the way
the state works, so it is fine to use it.
All polyhedra need a reference atom, but that atom can be any atom,
including one of the face atoms. It doesn't have to be a "central" atom.
The key is the (undocumented) TO option
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